TY - JOUR
T1 - XCloud-VIP
T2 - Virtual Peak Enables Highly Accelerated NMR Spectroscopy and Faithful Quantitative Measures
AU - Guo, Di
AU - Tu, Zhangren
AU - Guo, Yi
AU - Zhou, Yirong
AU - Wang, Jian
AU - Wang, Zi
AU - Qiu, Tianyu
AU - Xiao, Min
AU - Chen, Yinran
AU - Feng, Liubin
AU - Huang, Yuqing
AU - Lin, Donghai
AU - Hong, Qing
AU - Goldbourt, Amir
AU - Lin, Meijin
AU - Qu, Xiaobo
N1 - Publisher Copyright:
© 2015 IEEE.
PY - 2023
Y1 - 2023
N2 - Nuclear Magnetic Resonance (NMR) spectroscopy is an important bio-engineering tool to determine the metabolic concentrations, molecule structures and so on. The data acquisition time, however, is very long in multi-dimensional NMR. To accelerate data acquisition, non-uniformly sampling is an effective way but may encounter severe spectral distortions and unfaithful quantitative measures when the acceleration factor is high. By modelling the acquired signal as the superimposed exponentials, we proposed a virtual peak (VIP) approach to self-adapt the prior spectral information, such as the resonance frequency and peak lineshape, and then feed these information into the reconstruction. The proposed method is further implemented with cloud computing to facilitate online, open, and easy access. Results on simulated and experimental data demonstrate that, compared with the low-rank Hankel matrix method, the new approach reconstructs high-fidelity NMR spectra from highly undersampled data and achieves more accurate quantification. The maximum quantitative errors of distances between nuclear pairs and concentrations of metabolites in mixtures have been reduced by 61.1% and 57.7%, respectively.
AB - Nuclear Magnetic Resonance (NMR) spectroscopy is an important bio-engineering tool to determine the metabolic concentrations, molecule structures and so on. The data acquisition time, however, is very long in multi-dimensional NMR. To accelerate data acquisition, non-uniformly sampling is an effective way but may encounter severe spectral distortions and unfaithful quantitative measures when the acceleration factor is high. By modelling the acquired signal as the superimposed exponentials, we proposed a virtual peak (VIP) approach to self-adapt the prior spectral information, such as the resonance frequency and peak lineshape, and then feed these information into the reconstruction. The proposed method is further implemented with cloud computing to facilitate online, open, and easy access. Results on simulated and experimental data demonstrate that, compared with the low-rank Hankel matrix method, the new approach reconstructs high-fidelity NMR spectra from highly undersampled data and achieves more accurate quantification. The maximum quantitative errors of distances between nuclear pairs and concentrations of metabolites in mixtures have been reduced by 61.1% and 57.7%, respectively.
KW - Hankel matrix
KW - Machine learning
KW - fast sampling
KW - nuclear magnetic resonance spectroscopy
UR - http://www.scopus.com/inward/record.url?scp=85177612732&partnerID=8YFLogxK
U2 - 10.1109/TCI.2023.3330298
DO - 10.1109/TCI.2023.3330298
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AN - SCOPUS:85177612732
SN - 2573-0436
VL - 9
SP - 1043
EP - 1057
JO - IEEE Transactions on Computational Imaging
JF - IEEE Transactions on Computational Imaging
ER -