TY - JOUR
T1 - The underappreciated role of allostery in the cellular network
AU - Nussinov, Ruth
AU - Tsai, Chung Jung
AU - Ma, Buyong
PY - 2013/5
Y1 - 2013/5
N2 - Small-angle X-ray scattering (SAXS) is a robust technique for the comprehensive structural characterizations of biological macromolecular complexes in solution. Here, we present a coherent synthesis of SAXS theory and experiment with a focus on analytical tools for accurate, objective, and high-throughput investigations. Perceived SAXS limitations are considered in light of its origins, and we present current methods that extend SAXS data analysis to the er-resolution regime. In particular, we discuss hybrid structural methods, illustrating the role of SAXS in structure refinement with NMR and ensemble refinement with single-molecule FRET. High-throughput genomics and proteomics are far outpacing macromolecular structure determinations, creating ormation gaps between the plethora of newly identified genes, known structures, and the structure-function relationship in the underlying biological networks. SAXS can bridge these ormation gaps by providing a reliable, high-throughput structural characterization of macromolecular complexes under physiological conditions.
AB - Small-angle X-ray scattering (SAXS) is a robust technique for the comprehensive structural characterizations of biological macromolecular complexes in solution. Here, we present a coherent synthesis of SAXS theory and experiment with a focus on analytical tools for accurate, objective, and high-throughput investigations. Perceived SAXS limitations are considered in light of its origins, and we present current methods that extend SAXS data analysis to the er-resolution regime. In particular, we discuss hybrid structural methods, illustrating the role of SAXS in structure refinement with NMR and ensemble refinement with single-molecule FRET. High-throughput genomics and proteomics are far outpacing macromolecular structure determinations, creating ormation gaps between the plethora of newly identified genes, known structures, and the structure-function relationship in the underlying biological networks. SAXS can bridge these ormation gaps by providing a reliable, high-throughput structural characterization of macromolecular complexes under physiological conditions.
KW - cellular pathways
KW - conformational selection
KW - induced fit
KW - population shift
KW - protein dynamics
KW - regulation
UR - http://www.scopus.com/inward/record.url?scp=84876275408&partnerID=8YFLogxK
U2 - 10.1146/annurev-biophys-083012-130257
DO - 10.1146/annurev-biophys-083012-130257
M3 - ???researchoutput.researchoutputtypes.contributiontojournal.article???
AN - SCOPUS:84876275408
SN - 1936-122X
VL - 42
SP - 169
EP - 189
JO - Annual Review of Biophysics
JF - Annual Review of Biophysics
IS - 1
ER -