The era of reference genomes in conservation genomics

European Reference Genome Atlas (ERGA) Consortium

doi:10.1016/j.tree.2021.11.008

The era of reference genomes in conservation genomics

European Reference Genome Atlas (ERGA) Consortium

School of Zoology

Rockefeller University
LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG)
The University of Kaiserslautern-Landau
Senckenberg Biodiversity and Climate Research Centre (BiK-F)
University of Lisbon
University of Cambridge
Wellcome Sanger Institute
University of Milan
University of Göttingen
University of Florence
University of Porto
CSIC - Doñana Biological Station
Uppsala University
German Primate Center – Leibniz Institute for Primate Research
University of Liege
University of Oslo
University of Agder
University of Groningen
Center for Coastal Studies
Marine and Freshwater Research Institute
University of Antwerp
University of Cologne
University of Copenhagen
BGI-Shenzhen
Leibniz Institute for Zoo and Wildlife Research
Berlin Center for Genomics in Biodiversity Research (BeGenDiv)
Justus Liebig University Giessen
Slovak Academy of Sciences
CAS - Kunming Institute of Zoology
Yerevan State University
Centre for Genomic Regulation (CRG)
University of Barcelona
Natural History Museum of Geneva
University of Geneva
University of Montana
University of the Azores
CSIC - Institute of Natural Products and Agrobiology
Czech Academy of Sciences
Norwegian Institute for Water Research
Department of Life Sciences and Biotechnology
Research Museum Alexander Koenig - Leibniz Institute for Animal Biodiversity
California State Polytechnic University Pomona
Universite Claude Bernard Lyon 1
Bioversity International
IRD
University of Primorska
Environmental Protection College
University of the Basque Country
University of Zurich
Arizona State University
University of Neuchatel
Université de Montpellier
University of Potsdam
University of Bergen
Senckenberg Gesellschaft für Naturforschung
Pompeu Fabra University
Université Grenoble Alpes
Université libre de Bruxelles
Barcelona Supercomputing Center
Institute for Research in Biomedicine
ICREA
Centre of Molecular Medicine and Biobanking
University of Malta
Cornell University
Norwegian University of Science and Technology
Slovenian Forestry Institute
University of Edinburgh
Institut de recherche pour le développement
University of Hamburg
University of Tromsø – The Arctic University of Norway
Kurt Gödel Research Center for Mathematical Logic (KGRC)
LOEWE Centre for Translational Biodiversity Genomics
Goethe University Frankfurt
University of Goettiingen
Campus Institute Data Science (CIDAS)
Technical University in Zvolen
DIANA – Carpathian Wildlife Research
University of Warsaw
University of Helsinki
University of Aberdeen
Université Côte d'Azur
Hellenic Centre for Marine Research
ICREA at Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra)
Université Paris-Saclay
National Institutes of Health
Leibniz-Institute of Freshwater Ecology and Inland Fisheries
Free University of Berlin
University of Naples Federico II
Sorbonne Université
Complutense University
Ruder Boskovic Institute
University of Valencia
West University of Timisoara
Croatian Biospeleological Society
Swiss Federal Institute of Technology Zurich
Swiss Federal Institute for Forest, Snow and Landscape Research
University of Bari
National Research Council of Italy
Consorzio Interuniversitario Bioteconologie
CSIC - National Museum of Natural Sciences
The Natural History Museum, London
Naturhistorisches Museum Bern
University of Bern
University of L'Aquila
Swiss Federal Institute of Aquatic Science and Technology
University of Otago
Swedish University of Agricultural Sciences
Estonian University of Life Sciences
University of St Andrews
Max Planck Institute for Psycholinguistics
Istituto Agrario San Michele all'Adige
University of Lausanne
Swiss Institute of Bioinformatics
Stockholm University
Ludwig Maximilian University of Munich
Bavarian Natural History Collections
Queen Mary University of London
Alan Turing Institute
Centre for Molecular Medicine and Biobanking

Research output: Contribution to journal › Short survey › peer-review

231 Scopus citations

Abstract

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

Original language	English
Pages (from-to)	197-202
Number of pages	6
Journal	Trends in Ecology and Evolution
Volume	37
Issue number	3
DOIs	https://doi.org/10.1016/j.tree.2021.11.008
State	Published - Mar 2022

Funding

Funders
Fabien Condamine

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 15 Life on Land

Keywords

ERGA
European Reference Genome Atlas
biodiversity conservation
conservation genetics

Access to Document

10.1016/j.tree.2021.11.008

Cite this

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title = "The era of reference genomes in conservation genomics",

abstract = "Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.",

keywords = "ERGA, European Reference Genome Atlas, biodiversity conservation, conservation genetics",

author = "\{European Reference Genome Atlas (ERGA) Consortium\} and Giulio Formenti and Kathrin Theissinger and Carlos Fernandes and Iliana Bista and Aureliano Bombarely and Christoph Bleidorn and Claudio Ciofi and Angelica Crottini and Godoy, \{Jos{\'e} A.\} and Jacob H{\"o}glund and Joanna Malukiewicz and Alice Mouton and Oomen, \{Rebekah A.\} and Sadye Paez and Palsb{\o}ll, \{Per J.\} and Christophe Pampoulie and Ruiz-L{\'o}pez, \{Mar{\'i}a J.\} and Hannes Svardal and Constantina Theofanopoulou and \{de Vries\}, Jan and Waldvogel, \{Ann Marie\} and Guojie Zhang and Mazzoni, \{Camila J.\} and Jarvis, \{Erich D.\} and Mikl{\'o}s B{\'a}lint and Fedor {\v C}iampor and Jacob Hoglund and Per Palsb{\o}ll and Ruiz-L{\'o}pez, \{Mar{\'i}a Jos{\'e}\} and Goujie Zhang and Erich Jarvis and Aghayan, \{Sargis A.\} and Alioto, \{Tyler S.\} and Isabel Almudi and Nadir Alvarez and Alves, \{Paulo C.\} and Amorim, \{Isabel R.\} and Agostinho Antunes and Paula Arribas and Petr Baldrian and Berg, \{Paul R.\} and Giorgio Bertorelle and Astrid B{\"o}hne and Andrea Bonisoli-Alquati and Bo{\v s}tjan{\v c}i{\'c}, \{Ljudevit L.\} and Bastien Boussau and Breton, \{Catherine M.\} and Elena Buzan and Campos, \{Paula F.\} and Shai Meiri",

note = "Publisher Copyright: {\textcopyright} 2021",

year = "2022",

month = mar,

doi = "10.1016/j.tree.2021.11.008",

language = "אנגלית",

volume = "37",

pages = "197--202",

journal = "Trends in Ecology and Evolution",

issn = "0169-5347",

publisher = "Elsevier Ltd.",

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T1 - The era of reference genomes in conservation genomics

AU - European Reference Genome Atlas (ERGA) Consortium

AU - Formenti, Giulio

AU - Theissinger, Kathrin

AU - Fernandes, Carlos

AU - Bista, Iliana

AU - Bombarely, Aureliano

AU - Bleidorn, Christoph

AU - Ciofi, Claudio

AU - Crottini, Angelica

AU - Godoy, José A.

AU - Höglund, Jacob

AU - Malukiewicz, Joanna

AU - Mouton, Alice

AU - Oomen, Rebekah A.

AU - Paez, Sadye

AU - Palsbøll, Per J.

AU - Pampoulie, Christophe

AU - Ruiz-López, María J.

AU - Svardal, Hannes

AU - Theofanopoulou, Constantina

AU - de Vries, Jan

AU - Waldvogel, Ann Marie

AU - Zhang, Guojie

AU - Mazzoni, Camila J.

AU - Jarvis, Erich D.

AU - Bálint, Miklós

AU - Čiampor, Fedor

AU - Hoglund, Jacob

AU - Palsbøll, Per

AU - Ruiz-López, María José

AU - Zhang, Goujie

AU - Jarvis, Erich

AU - Aghayan, Sargis A.

AU - Alioto, Tyler S.

AU - Almudi, Isabel

AU - Alvarez, Nadir

AU - Alves, Paulo C.

AU - Amorim, Isabel R.

AU - Antunes, Agostinho

AU - Arribas, Paula

AU - Baldrian, Petr

AU - Berg, Paul R.

AU - Bertorelle, Giorgio

AU - Böhne, Astrid

AU - Bonisoli-Alquati, Andrea

AU - Boštjančić, Ljudevit L.

AU - Boussau, Bastien

AU - Breton, Catherine M.

AU - Buzan, Elena

AU - Campos, Paula F.

AU - Meiri, Shai

PY - 2022/3

Y1 - 2022/3

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AB - Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

KW - ERGA

KW - European Reference Genome Atlas

KW - biodiversity conservation

KW - conservation genetics

UR - https://www.scopus.com/pages/publications/85123684072

U2 - 10.1016/j.tree.2021.11.008

DO - 10.1016/j.tree.2021.11.008

M3 - ???researchoutput.researchoutputtypes.contributiontojournal.shortsurvey???

C2 - 35086739

AN - SCOPUS:85123684072

SN - 0169-5347

VL - 37

SP - 197

EP - 202

JO - Trends in Ecology and Evolution

JF - Trends in Ecology and Evolution

IS - 3

ER -

The era of reference genomes in conservation genomics

Abstract

Funding

UN SDGs

Keywords

Access to Document

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