Testing metric properties

Michal Parnas, Dana Ron

Research output: Contribution to journalArticlepeer-review

Abstract

Finite metric spaces, and in particular tree metrics play an important role in various disciplines such as evolutionary biology and statistics. A natural family of problems concerning metrics is deciding, given a matrix M, whether or not it is a distance metric of a certain predetermined type. Here we consider the following relaxed version of such decision problems: For any given matrix M and parameter ∈, we are interested in determining, by probing M, whether M has a particular metric property P, or whether it is ∈-far from having the property. In ∈-far we mean that at least an ∈-fraction of the entries of M must be modified so that it obtains the property. The algorithm may query the matrix on entries M[i, j] of its choice, and is allowed a constant probability of error. We describe algorithms for testing Euclidean metrics, tree metrics and ultrametrics. Furthermore, we present an algorithm that tests whether a matrix M is an approximate ultrametric. In all cases the query complexity and running time are polynomial in 1/∈ and independent of the size of the matrix. Finally, our algorithms can be used to solve relaxed versions of the corresponding search problems in time that is sub-linear in the size of the matrix.

Original languageEnglish
Pages (from-to)155-195
Number of pages41
JournalInformation and Computation
Volume187
Issue number2
DOIs
StatePublished - 15 Dec 2003

Fingerprint

Dive into the research topics of 'Testing metric properties'. Together they form a unique fingerprint.

Cite this