Structural flexibility of Ca_V1.2 and Ca_V2.2 I-II proximal linker fragments in solution

Voltage-dependent calcium channels (Ca_V) enable the inward flow of calcium currents for a wide range of cells. Ca_V1 and Ca _V2 subtype α1 subunits form the conducting pore using four repeated membrane domains connected by intracellular linkers. The domain I-II linker connects to the membrane gate (IS6), forming an α-helix, and is bound to the Ca_Vβ subunit. Previous studies indicated that this region may or may not form a continuous helix depending on the Ca_V subtype, thereby modulating channel activation and inactivation properties. Here, we used small-angle x-ray scattering and ensemble modeling analysis to investigate the solution structure of these linkers, extending from the membrane domain and including the Ca_Vβ-binding site, called the proximal linker (PL). The results demonstrate that the Ca_V1.2 PL is more flexible than the Ca_V2.2 PL, the flexibility is intrinsic and not dependent on Ca_Vβ binding, and the flexibility can be most easily explained by the presence of conserved glycines. Our analysis also provides a robust example of investigating protein domains in which flexibility plays an essential role.