TY - JOUR
T1 - RRTree
T2 - Relative-Rate Tests between groups of sequences on a phylogenetic tree
AU - Robinson-Rechavi, Marc
AU - Huchon, Dorothée
N1 - Funding Information:
Many functions used in RRTree were adapted from the code of PHYLO WIN (Galtier et al., 1996), and we warmly thank Nicolas Galtier for letting us use them. Manolo Gouy, Guy Perrière and Tal Pupko gave helpful advice. Thanks to all beta-users who signaled bugs or suggested improvements. D.H. is supported by a MENESR grant (N 97132), and part of this work was done when M.R.R. was a recipient of a Lavoisier grant from the French Ministry of Foreign Affairs. RRTree is hosted by the ftp site of the Pôle BioInformatique Lyonnais.
PY - 2000/3
Y1 - 2000/3
N2 - RRTree is a user-friendly program for comparing substitution rates between lineages of protein or DNA sequences, relative to an outgroup, through relative rate tests. Genetic diversity is taken into account through use of several sequences, and phylogenetic relations are integrated by topological weighting. Availability: The ANSI C source code of RRTree, and compiled versions for Macintosh, MS-DOS/Windows, SUN Solaris, and CGI, are freely available at http://pbil.univ-lyon1.fr/software/rrtree.html.
AB - RRTree is a user-friendly program for comparing substitution rates between lineages of protein or DNA sequences, relative to an outgroup, through relative rate tests. Genetic diversity is taken into account through use of several sequences, and phylogenetic relations are integrated by topological weighting. Availability: The ANSI C source code of RRTree, and compiled versions for Macintosh, MS-DOS/Windows, SUN Solaris, and CGI, are freely available at http://pbil.univ-lyon1.fr/software/rrtree.html.
UR - http://www.scopus.com/inward/record.url?scp=0034129663&partnerID=8YFLogxK
U2 - 10.1093/bioinformatics/16.3.296
DO - 10.1093/bioinformatics/16.3.296
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C2 - 10869026
AN - SCOPUS:0034129663
SN - 1367-4803
VL - 16
SP - 296
EP - 297
JO - Bioinformatics
JF - Bioinformatics
IS - 3
ER -