TY - JOUR
T1 - Review
T2 - Cancer and neurodevelopmental disorders: multi-scale reasoning and computational guide
AU - Nussinov, Ruth
AU - Yavuz, Bengi Ruken
AU - Demirel, Habibe Cansu
AU - Arici, M. Kaan
AU - Jang, Hyunbum
AU - Tuncbag, Nurcan
N1 - Publisher Copyright:
Copyright © 2024 Nussinov, Yavuz, Demirel, Arici, Jang and Tuncbag.
PY - 2024
Y1 - 2024
N2 - The connection and causality between cancer and neurodevelopmental disorders have been puzzling. How can the same cellular pathways, proteins, and mutations lead to pathologies with vastly different clinical presentations? And why do individuals with neurodevelopmental disorders, such as autism and schizophrenia, face higher chances of cancer emerging throughout their lifetime? Our broad review emphasizes the multi-scale aspect of this type of reasoning. As these examples demonstrate, rather than focusing on a specific organ system or disease, we aim at the new understanding that can be gained. Within this framework, our review calls attention to computational strategies which can be powerful in discovering connections, causalities, predicting clinical outcomes, and are vital for drug discovery. Thus, rather than centering on the clinical features, we draw on the rapidly increasing data on the molecular level, including mutations, isoforms, three-dimensional structures, and expression levels of the respective disease-associated genes. Their integrated analysis, together with chromatin states, can delineate how, despite being connected, neurodevelopmental disorders and cancer differ, and how the same mutations can lead to different clinical symptoms. Here, we seek to uncover the emerging connection between cancer, including pediatric tumors, and neurodevelopmental disorders, and the tantalizing questions that this connection raises.
AB - The connection and causality between cancer and neurodevelopmental disorders have been puzzling. How can the same cellular pathways, proteins, and mutations lead to pathologies with vastly different clinical presentations? And why do individuals with neurodevelopmental disorders, such as autism and schizophrenia, face higher chances of cancer emerging throughout their lifetime? Our broad review emphasizes the multi-scale aspect of this type of reasoning. As these examples demonstrate, rather than focusing on a specific organ system or disease, we aim at the new understanding that can be gained. Within this framework, our review calls attention to computational strategies which can be powerful in discovering connections, causalities, predicting clinical outcomes, and are vital for drug discovery. Thus, rather than centering on the clinical features, we draw on the rapidly increasing data on the molecular level, including mutations, isoforms, three-dimensional structures, and expression levels of the respective disease-associated genes. Their integrated analysis, together with chromatin states, can delineate how, despite being connected, neurodevelopmental disorders and cancer differ, and how the same mutations can lead to different clinical symptoms. Here, we seek to uncover the emerging connection between cancer, including pediatric tumors, and neurodevelopmental disorders, and the tantalizing questions that this connection raises.
KW - artificial intelligence
KW - chromatin
KW - comorbidity
KW - machine learning
KW - mutations
KW - pediatric tumors
KW - protein-protein interaction (PPI) networks
KW - transcriptomics
UR - http://www.scopus.com/inward/record.url?scp=85198513966&partnerID=8YFLogxK
U2 - 10.3389/fcell.2024.1376639
DO - 10.3389/fcell.2024.1376639
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C2 - 39015651
AN - SCOPUS:85198513966
SN - 2296-634X
VL - 12
JO - Frontiers in Cell and Developmental Biology
JF - Frontiers in Cell and Developmental Biology
M1 - 1376639
ER -