NetCmpt: A network-based tool for calculating the metabolic competition between bacterial species

Anat Kreimer; Adi Doron-Faigenboim; Elhanan Borenstein; Shiri Freilich

doi:10.1093/bioinformatics/bts323

NetCmpt: A network-based tool for calculating the metabolic competition between bacterial species

Anat Kreimer^*, Adi Doron-Faigenboim, Elhanan Borenstein, Shiri Freilich

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

35 Scopus citations

Abstract

Summary: NetCmpt is a tool for calculating the competitive potential between pairs of bacterial species. The score describes the effective metabolic overlap (EMO) between two species, derived from analyzing the topology of the corresponding metabolic models. NetCmpt is based on the EMO algorithm, developed and validated in previous studies. It takes as input lists of species-specific enzymatic reactions (EC numbers) and generates a matrix of the potential competition scores between all pairwise combinations.

Original language	English
Article number	bts323
Pages (from-to)	2195-2197
Number of pages	3
Journal	Bioinformatics
Volume	28
Issue number	16
DOIs	https://doi.org/10.1093/bioinformatics/bts323
State	Published - Aug 2012
Externally published	Yes

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10.1093/bioinformatics/bts323

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abstract = "Summary: NetCmpt is a tool for calculating the competitive potential between pairs of bacterial species. The score describes the effective metabolic overlap (EMO) between two species, derived from analyzing the topology of the corresponding metabolic models. NetCmpt is based on the EMO algorithm, developed and validated in previous studies. It takes as input lists of species-specific enzymatic reactions (EC numbers) and generates a matrix of the potential competition scores between all pairwise combinations.",

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NetCmpt: A network-based tool for calculating the metabolic competition between bacterial species

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