TY - JOUR
T1 - Modelling and measuring intracellular competition for finite resources during gene expression
AU - Sabi, Renana
AU - Tuller, Tamir
N1 - Publisher Copyright:
© 2019 The Author(s) Published by the Royal Society. All rights reserved.
PY - 2019/5/1
Y1 - 2019/5/1
N2 - Dissecting the competition between genes for shared expressional resources is of fundamental importance for understanding the interplay between cellular components. Owing to the relationship between gene expression and cellular fitness, genomes are shaped by evolution to improve resource allocation. Whereas experimental approaches to investigate intracellular competition require technical resources and human expertise, computational models and in silico simulations allow vast numbers of experiments to be carried out and controlled easily, and with significantly reduced costs. Thus, modelling competition has a pivotal role in understanding the effects of competition on the biophysics of the cell. In this article, we review various computational models proposed to describe the different types of competition during gene expression. We also present relevant synthetic biology experiments and their biotechnological implications, and discuss the open questions in the field.
AB - Dissecting the competition between genes for shared expressional resources is of fundamental importance for understanding the interplay between cellular components. Owing to the relationship between gene expression and cellular fitness, genomes are shaped by evolution to improve resource allocation. Whereas experimental approaches to investigate intracellular competition require technical resources and human expertise, computational models and in silico simulations allow vast numbers of experiments to be carried out and controlled easily, and with significantly reduced costs. Thus, modelling competition has a pivotal role in understanding the effects of competition on the biophysics of the cell. In this article, we review various computational models proposed to describe the different types of competition during gene expression. We also present relevant synthetic biology experiments and their biotechnological implications, and discuss the open questions in the field.
KW - Computational and mathematical models
KW - Finite resources
KW - Gene expression
KW - Intracellular competition
KW - Synthetic biology
KW - Systems biology
UR - http://www.scopus.com/inward/record.url?scp=85066457986&partnerID=8YFLogxK
U2 - 10.1098/rsif.2018.0887
DO - 10.1098/rsif.2018.0887
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AN - SCOPUS:85066457986
SN - 1742-5689
VL - 16
JO - Journal of the Royal Society Interface
JF - Journal of the Royal Society Interface
IS - 154
M1 - 20180887
ER -