@article{a0f5565cd4e54a999a37196065f164cd,
title = "MetaReg: A platform for modeling, analysis and visualization of biological systems using large-scale experimental data",
abstract = "MetaReg http://acgt.cs.tau.ac.il/metareg/application.html is a computational tool that models cellular networks and integrates experimental results with such models. MetaReg represents established knowledge about a biological system, available today mostly in informal form in the literature, as probabilistic network models with underlying combinatorial regulatory logic. MetaReg enables contrasting predictions with measurements, model improvements and studying what-if scenarios. By summarizing prior knowledge and providing visual and computational aids, it helps the expert explore and understand her system better.",
author = "Igor Ulitsky and Irit Gat-Viks and Ron Shamir",
note = "Funding Information: This work was supported by the EMI-CD project, which is funded by the European Commission within its FP6 Programme, under the thematic area 'Life sciences, genomics and biotechnology for health', contract number LSHG-CT-2003-503269. The information in this document is provided as is and no guarantee or warranty is given that the information is fit for any particular purpose. The user thereof uses the information at its sole risk and liability. The graphical capabilities of the model layout and related dialogs are deeply based on the implementations of the PIVOT [26] and SPIKE [24] software developed in close collaboration by R Shamir's group and Y Shiloh's group at the School of Medicine, Tel Aviv University. We are especially indebted to Giora Sternberg and Ran Blekhman for their fruitful support. The interactive data matrix display has been developed by Israel Steinfeld for the SIMBA website [27]. We also would like to thank Amos Tanay for helpful discussions and Ewa Szczurek for testing MetaReg and helping to improve it. I Ulitsky is a fellow of the Edmond J Safra Bioinfor-matics Program at Tel-Aviv University.",
year = "2008",
month = jan,
day = "2",
doi = "10.1186/gb-2008-9-1-r1",
language = "אנגלית",
volume = "9",
journal = "Genome Biology",
issn = "1474-7596",
publisher = "BioMed Central Ltd.",
number = "1",
}