Human genetic and immunological determinants of critical COVID-19 pneumonia

COVID Human Genetic Effort

Research output: Contribution to journalReview articlepeer-review

267 Scopus citations

Abstract

SARS-CoV-2 infection is benign in most individuals but, in around 10% of cases, it triggers hypoxaemic COVID-19 pneumonia, which leads to critical illness in around 3% of cases. The ensuing risk of death (approximately 1% across age and gender) doubles every five years from childhood onwards and is around 1.5 times greater in men than in women. Here we review the molecular and cellular determinants of critical COVID-19 pneumonia. Inborn errors of type I interferons (IFNs), including autosomal TLR3 and X-chromosome-linked TLR7 deficiencies, are found in around 1–5% of patients with critical pneumonia under 60 years old, and a lower proportion in older patients. Pre-existing auto-antibodies neutralizing IFNα, IFNβ and/or IFNω, which are more common in men than in women, are found in approximately 15–20% of patients with critical pneumonia over 70 years old, and a lower proportion in younger patients. Thus, at least 15% of cases of critical COVID-19 pneumonia can be explained. The TLR3- and TLR7-dependent production of type I IFNs by respiratory epithelial cells and plasmacytoid dendritic cells, respectively, is essential for host defence against SARS-CoV-2. In ways that can depend on age and sex, insufficient type I IFN immunity in the respiratory tract during the first few days of infection may account for the spread of the virus, leading to pulmonary and systemic inflammation.

Original languageEnglish
Pages (from-to)587-598
Number of pages12
JournalNature
Volume603
Issue number7902
DOIs
StatePublished - 24 Mar 2022

Funding

FundersFunder number
French Foundation for Medical Research
Square Foundation
SCOR Corporate Foundation for Science
Institut national de la santé et de la recherche médicale
Fondation Bettencourt Schueller
Meyer Foundation
Fondation du Souffle
St. Giles Foundation
Fisher Center for Alzheimer's Research Foundation
National Institutes of Health
Rockefeller University
JPB Foundation
Yale Center for Mendelian Genomics
Emergent Ventures
Institut des maladies génétiques Imagine
Howard Hughes Medical Institute
National Institute of Allergy and Infectious DiseasesZIAAI001265, R01AI163029, R01AI088364
Ministère de l'Enseignement supérieur, de la Recherche et de l'InnovationMESRI-COVID-19
Regione LazioA0375-2020-36663
Agence Nationale de la RechercheANR-20-COVI-0003, ANR-10-IAHU-01
National Center for Advancing Translational SciencesUL1TR001863, UL1TR001866
Agence Nationale de Recherches sur le Sida et les Hépatites Virales21-COVR-0039, ANR-20-CE93-003, ANR-20-CO11-0001, ANRS-COV05
National Human Genome Research InstituteU24HG008956, UM1HG006504
Horizon 2020 Framework Programme824110
NIH Office of the DirectorS10OD018521
Yale High Performance Computing CenterS10OD018521
Université de ParisEA20170638020
Integrative Biology of Emerging Infectious Diseases Laboratory of ExcellenceANR-10-LABX-62-IBEID
Fondation pour la Recherche MédicaleEQU201903007798

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