Guidelines and recommendations on yeast cell death nomenclature

Didac Carmona-Gutierrez; Maria Anna Bauer; Andreas Zimmermann; Andrés Aguilera; Nicanor Austriaco; Kathryn Ayscough; Rena Balzan; Shoshana Bar-Nun; Antonio Barrientos; Peter Belenky; Marc Blondel; Ralf J. Braun; Michael Breitenbach; William C. Burhans; Sabrina Büttner; Duccio Cavalieri; Michael Chang; Katrina F. Cooper; Manuela Côrte-Real; Vítor Costa; Christophe Cullin; Ian Dawes; Jörn Dengjel; Martin B. Dickman; Tobias Eisenberg; Birthe Fahrenkrog; Nicolas Fasel; Kai Uwe Fröhlich; Ali Gargouri; Sergio Giannattasio; Paola Goffrini; Campbell W. Gourlay; Chris M. Grant; Michael T. Greenwood; Nicoletta Guaragnella; Thomas Heger; Jürgen Heinisch; Eva Herker; Johannes M. Herrmann; Sebastian Hofer; Antonio Jiménez-Ruiz; Helmut Jungwirth; Katharina Kainz; Dimitrios P. Kontoyiannis; Paula Ludovico; Stéphen Manon; Enzo Martegani; Cristina Mazzoni; Lynn A. Megeney; Chris Meisinger; Jens Nielsen; Thomas Nyström; Heinz D. Osiewacz; Tiago F. Outeiro; Hay Oak Park; Tobias Pendl; Dina Petranovic; Stephane Picot; Peter Polčic; Ted Powers; Mark Ramsdale; Mark Rinnerthaler; Patrick Rockenfeller; Christoph Ruckenstuhl; Raffael Schaffrath; Maria Segovia; Fedor F. Severin; Amir Sharon; Stephan J. Sigrist; Cornelia Sommer-Ruck; Maria João Sousa; Johan M. Thevelein; Karin Thevissen; Vladimir Titorenko; Michel B. Toledano; Mick Tuite; F. Nora Vögtle; Benedikt Westermann; Joris Winderickx; Silke Wissing; Stefan Wölfl; Zhaojie J. Zhang; Richard Y. Zhao; Bing Zhou; Lorenzo Galluzzi; Guido Kroemer; Frank Madeo

doi:10.15698/mic2018.01.607

Guidelines and recommendations on yeast cell death nomenclature

Didac Carmona-Gutierrez^*, Maria Anna Bauer, Andreas Zimmermann, Andrés Aguilera, Nicanor Austriaco, Kathryn Ayscough, Rena Balzan, Shoshana Bar-Nun, Antonio Barrientos, Peter Belenky, Marc Blondel, Ralf J. Braun, Michael Breitenbach, William C. Burhans, Sabrina Büttner, Duccio Cavalieri, Michael Chang, Katrina F. Cooper, Manuela Côrte-Real, Vítor CostaChristophe Cullin, Ian Dawes, Jörn Dengjel, Martin B. Dickman, Tobias Eisenberg, Birthe Fahrenkrog, Nicolas Fasel, Kai Uwe Fröhlich, Ali Gargouri, Sergio Giannattasio, Paola Goffrini, Campbell W. Gourlay, Chris M. Grant, Michael T. Greenwood, Nicoletta Guaragnella, Thomas Heger, Jürgen Heinisch, Eva Herker, Johannes M. Herrmann, Sebastian Hofer, Antonio Jiménez-Ruiz, Helmut Jungwirth, Katharina Kainz, Dimitrios P. Kontoyiannis, Paula Ludovico, Stéphen Manon, Enzo Martegani, Cristina Mazzoni, Lynn A. Megeney, Chris Meisinger, Jens Nielsen, Thomas Nyström, Heinz D. Osiewacz, Tiago F. Outeiro, Hay Oak Park, Tobias Pendl, Dina Petranovic, Stephane Picot, Peter Polčic, Ted Powers, Mark Ramsdale, Mark Rinnerthaler, Patrick Rockenfeller, Christoph Ruckenstuhl, Raffael Schaffrath, Maria Segovia, Fedor F. Severin, Amir Sharon, Stephan J. Sigrist, Cornelia Sommer-Ruck, Maria João Sousa, Johan M. Thevelein, Karin Thevissen, Vladimir Titorenko, Michel B. Toledano, Mick Tuite, F. Nora Vögtle, Benedikt Westermann, Joris Winderickx, Silke Wissing, Stefan Wölfl, Zhaojie J. Zhang, Richard Y. Zhao, Bing Zhou, Lorenzo Galluzzi, Guido Kroemer, Frank Madeo

^*Corresponding author for this work

Research output: Contribution to journal › Review article › peer-review

143 Scopus citations

Abstract

Elucidating the biology of yeast in its full complexity has major implications for science, medicine and industry. One of the most critical processes determining yeast life and physiology is cellular demise. However, the investigation of yeast cell death is a relatively young field, and a widely accepted set of concepts and terms is still missing. Here, we propose unified criteria for the definition of accidental, regulated, and programmed forms of cell death in yeast based on a series of morphological and biochemical criteria. Specifically, we provide consensus guidelines on the differential definition of terms including apoptosis, regulated necrosis, and autophagic cell death, as we refer to additional cell death routines that are relevant for the biology of (at least some species of) yeast. As this area of investigation advances rapidly, changes and extensions to this set of recommendations will be implemented in the years to come. Nonetheless, we strongly encourage the authors, reviewers and editors of scientific articles to adopt these collective standards in order to establish an accurate framework for yeast cell death research and, ultimately, to accelerate the progress of this vibrant field of research.

Original language	English
Pages (from-to)	4-31
Number of pages	28
Journal	Microbial Cell
Volume	5
Issue number	1
DOIs	https://doi.org/10.15698/mic2018.01.607
State	Published - Jan 2018

Funding

Funders	Funder number
U.S. Department of Veterans Affairs	I01BX003303

Keywords

Accidental cell death
Apoptosis
Autophagic cell death
Autophagy
Caspases
Mitochondrial membrane permeabilization
Mitotic catastrophe
Model organism
Necrosis
Reactive oxygen species
Regulated cell death
Saccharomyces cerevisiae

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10.15698/mic2018.01.607

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Carmona-Gutierrez, D., Bauer, M. A., Zimmermann, A., Aguilera, A., Austriaco, N., Ayscough, K., Balzan, R., Bar-Nun, S., Barrientos, A., Belenky, P., Blondel, M., Braun, R. J., Breitenbach, M., Burhans, W. C., Büttner, S., Cavalieri, D., Chang, M., Cooper, K. F., Côrte-Real, M., ... Madeo, F. (2018). Guidelines and recommendations on yeast cell death nomenclature. Microbial Cell, 5(1), 4-31. https://doi.org/10.15698/mic2018.01.607

@article{fe45336e422a48cd88f9121591d86f3a,

title = "Guidelines and recommendations on yeast cell death nomenclature",

abstract = "Elucidating the biology of yeast in its full complexity has major implications for science, medicine and industry. One of the most critical processes determining yeast life and physiology is cellular demise. However, the investigation of yeast cell death is a relatively young field, and a widely accepted set of concepts and terms is still missing. Here, we propose unified criteria for the definition of accidental, regulated, and programmed forms of cell death in yeast based on a series of morphological and biochemical criteria. Specifically, we provide consensus guidelines on the differential definition of terms including apoptosis, regulated necrosis, and autophagic cell death, as we refer to additional cell death routines that are relevant for the biology of (at least some species of) yeast. As this area of investigation advances rapidly, changes and extensions to this set of recommendations will be implemented in the years to come. Nonetheless, we strongly encourage the authors, reviewers and editors of scientific articles to adopt these collective standards in order to establish an accurate framework for yeast cell death research and, ultimately, to accelerate the progress of this vibrant field of research.",

keywords = "Accidental cell death, Apoptosis, Autophagic cell death, Autophagy, Caspases, Mitochondrial membrane permeabilization, Mitotic catastrophe, Model organism, Necrosis, Reactive oxygen species, Regulated cell death, Saccharomyces cerevisiae",

author = "Didac Carmona-Gutierrez and Bauer, {Maria Anna} and Andreas Zimmermann and Andr{\'e}s Aguilera and Nicanor Austriaco and Kathryn Ayscough and Rena Balzan and Shoshana Bar-Nun and Antonio Barrientos and Peter Belenky and Marc Blondel and Braun, {Ralf J.} and Michael Breitenbach and Burhans, {William C.} and Sabrina B{\"u}ttner and Duccio Cavalieri and Michael Chang and Cooper, {Katrina F.} and Manuela C{\^o}rte-Real and V{\'i}tor Costa and Christophe Cullin and Ian Dawes and J{\"o}rn Dengjel and Dickman, {Martin B.} and Tobias Eisenberg and Birthe Fahrenkrog and Nicolas Fasel and Fr{\"o}hlich, {Kai Uwe} and Ali Gargouri and Sergio Giannattasio and Paola Goffrini and Gourlay, {Campbell W.} and Grant, {Chris M.} and Greenwood, {Michael T.} and Nicoletta Guaragnella and Thomas Heger and J{\"u}rgen Heinisch and Eva Herker and Herrmann, {Johannes M.} and Sebastian Hofer and Antonio Jim{\'e}nez-Ruiz and Helmut Jungwirth and Katharina Kainz and Kontoyiannis, {Dimitrios P.} and Paula Ludovico and St{\'e}phen Manon and Enzo Martegani and Cristina Mazzoni and Megeney, {Lynn A.} and Chris Meisinger and Jens Nielsen and Thomas Nystr{\"o}m and Osiewacz, {Heinz D.} and Outeiro, {Tiago F.} and Park, {Hay Oak} and Tobias Pendl and Dina Petranovic and Stephane Picot and Peter Pol{\v c}ic and Ted Powers and Mark Ramsdale and Mark Rinnerthaler and Patrick Rockenfeller and Christoph Ruckenstuhl and Raffael Schaffrath and Maria Segovia and Severin, {Fedor F.} and Amir Sharon and Sigrist, {Stephan J.} and Cornelia Sommer-Ruck and Sousa, {Maria Jo{\~a}o} and Thevelein, {Johan M.} and Karin Thevissen and Vladimir Titorenko and Toledano, {Michel B.} and Mick Tuite and V{\"o}gtle, {F. Nora} and Benedikt Westermann and Joris Winderickx and Silke Wissing and Stefan W{\"o}lfl and Zhang, {Zhaojie J.} and Zhao, {Richard Y.} and Bing Zhou and Lorenzo Galluzzi and Guido Kroemer and Frank Madeo",

note = "Publisher Copyright: {\textcopyright} 2018 Carmona-Gutierrez et al.",

year = "2018",

month = jan,

doi = "10.15698/mic2018.01.607",

language = "אנגלית",

volume = "5",

pages = "4--31",

journal = "Microbial Cell",

issn = "2311-2638",

publisher = "Shared Science Publishers OG",

number = "1",

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Carmona-Gutierrez, D, Bauer, MA, Zimmermann, A, Aguilera, A, Austriaco, N, Ayscough, K, Balzan, R, Bar-Nun, S, Barrientos, A, Belenky, P, Blondel, M, Braun, RJ, Breitenbach, M, Burhans, WC, Büttner, S, Cavalieri, D, Chang, M, Cooper, KF, Côrte-Real, M, Costa, V, Cullin, C, Dawes, I, Dengjel, J, Dickman, MB, Eisenberg, T, Fahrenkrog, B, Fasel, N, Fröhlich, KU, Gargouri, A, Giannattasio, S, Goffrini, P, Gourlay, CW, Grant, CM, Greenwood, MT, Guaragnella, N, Heger, T, Heinisch, J, Herker, E, Herrmann, JM, Hofer, S, Jiménez-Ruiz, A, Jungwirth, H, Kainz, K, Kontoyiannis, DP, Ludovico, P, Manon, S, Martegani, E, Mazzoni, C, Megeney, LA, Meisinger, C, Nielsen, J, Nyström, T, Osiewacz, HD, Outeiro, TF, Park, HO, Pendl, T, Petranovic, D, Picot, S, Polčic, P, Powers, T, Ramsdale, M, Rinnerthaler, M, Rockenfeller, P, Ruckenstuhl, C, Schaffrath, R, Segovia, M, Severin, FF, Sharon, A, Sigrist, SJ, Sommer-Ruck, C, Sousa, MJ, Thevelein, JM, Thevissen, K, Titorenko, V, Toledano, MB, Tuite, M, Vögtle, FN, Westermann, B, Winderickx, J, Wissing, S, Wölfl, S, Zhang, ZJ, Zhao, RY, Zhou, B, Galluzzi, L, Kroemer, G & Madeo, F 2018, 'Guidelines and recommendations on yeast cell death nomenclature', Microbial Cell, vol. 5, no. 1, pp. 4-31. https://doi.org/10.15698/mic2018.01.607

TY - JOUR

T1 - Guidelines and recommendations on yeast cell death nomenclature

AU - Carmona-Gutierrez, Didac

AU - Bauer, Maria Anna

AU - Zimmermann, Andreas

AU - Aguilera, Andrés

AU - Austriaco, Nicanor

AU - Ayscough, Kathryn

AU - Balzan, Rena

AU - Bar-Nun, Shoshana

AU - Barrientos, Antonio

AU - Belenky, Peter

AU - Blondel, Marc

AU - Braun, Ralf J.

AU - Breitenbach, Michael

AU - Burhans, William C.

AU - Büttner, Sabrina

AU - Cavalieri, Duccio

AU - Chang, Michael

AU - Cooper, Katrina F.

AU - Côrte-Real, Manuela

AU - Costa, Vítor

AU - Cullin, Christophe

AU - Dawes, Ian

AU - Dengjel, Jörn

AU - Dickman, Martin B.

AU - Eisenberg, Tobias

AU - Fahrenkrog, Birthe

AU - Fasel, Nicolas

AU - Fröhlich, Kai Uwe

AU - Gargouri, Ali

AU - Giannattasio, Sergio

AU - Goffrini, Paola

AU - Gourlay, Campbell W.

AU - Grant, Chris M.

AU - Greenwood, Michael T.

AU - Guaragnella, Nicoletta

AU - Heger, Thomas

AU - Heinisch, Jürgen

AU - Herker, Eva

AU - Herrmann, Johannes M.

AU - Hofer, Sebastian

AU - Jiménez-Ruiz, Antonio

AU - Jungwirth, Helmut

AU - Kainz, Katharina

AU - Kontoyiannis, Dimitrios P.

AU - Ludovico, Paula

AU - Manon, Stéphen

AU - Martegani, Enzo

AU - Mazzoni, Cristina

AU - Megeney, Lynn A.

AU - Meisinger, Chris

AU - Nielsen, Jens

AU - Nyström, Thomas

AU - Osiewacz, Heinz D.

AU - Outeiro, Tiago F.

AU - Park, Hay Oak

AU - Pendl, Tobias

AU - Petranovic, Dina

AU - Picot, Stephane

AU - Polčic, Peter

AU - Powers, Ted

AU - Ramsdale, Mark

AU - Rinnerthaler, Mark

AU - Rockenfeller, Patrick

AU - Ruckenstuhl, Christoph

AU - Schaffrath, Raffael

AU - Segovia, Maria

AU - Severin, Fedor F.

AU - Sharon, Amir

AU - Sigrist, Stephan J.

AU - Sommer-Ruck, Cornelia

AU - Sousa, Maria João

AU - Thevelein, Johan M.

AU - Thevissen, Karin

AU - Titorenko, Vladimir

AU - Toledano, Michel B.

AU - Tuite, Mick

AU - Vögtle, F. Nora

AU - Westermann, Benedikt

AU - Winderickx, Joris

AU - Wissing, Silke

AU - Wölfl, Stefan

AU - Zhang, Zhaojie J.

AU - Zhao, Richard Y.

AU - Zhou, Bing

AU - Galluzzi, Lorenzo

AU - Kroemer, Guido

AU - Madeo, Frank

PY - 2018/1

Y1 - 2018/1

N2 - Elucidating the biology of yeast in its full complexity has major implications for science, medicine and industry. One of the most critical processes determining yeast life and physiology is cellular demise. However, the investigation of yeast cell death is a relatively young field, and a widely accepted set of concepts and terms is still missing. Here, we propose unified criteria for the definition of accidental, regulated, and programmed forms of cell death in yeast based on a series of morphological and biochemical criteria. Specifically, we provide consensus guidelines on the differential definition of terms including apoptosis, regulated necrosis, and autophagic cell death, as we refer to additional cell death routines that are relevant for the biology of (at least some species of) yeast. As this area of investigation advances rapidly, changes and extensions to this set of recommendations will be implemented in the years to come. Nonetheless, we strongly encourage the authors, reviewers and editors of scientific articles to adopt these collective standards in order to establish an accurate framework for yeast cell death research and, ultimately, to accelerate the progress of this vibrant field of research.

AB - Elucidating the biology of yeast in its full complexity has major implications for science, medicine and industry. One of the most critical processes determining yeast life and physiology is cellular demise. However, the investigation of yeast cell death is a relatively young field, and a widely accepted set of concepts and terms is still missing. Here, we propose unified criteria for the definition of accidental, regulated, and programmed forms of cell death in yeast based on a series of morphological and biochemical criteria. Specifically, we provide consensus guidelines on the differential definition of terms including apoptosis, regulated necrosis, and autophagic cell death, as we refer to additional cell death routines that are relevant for the biology of (at least some species of) yeast. As this area of investigation advances rapidly, changes and extensions to this set of recommendations will be implemented in the years to come. Nonetheless, we strongly encourage the authors, reviewers and editors of scientific articles to adopt these collective standards in order to establish an accurate framework for yeast cell death research and, ultimately, to accelerate the progress of this vibrant field of research.

KW - Accidental cell death

KW - Apoptosis

KW - Autophagic cell death

KW - Autophagy

KW - Caspases

KW - Mitochondrial membrane permeabilization

KW - Mitotic catastrophe

KW - Model organism

KW - Necrosis

KW - Reactive oxygen species

KW - Regulated cell death

KW - Saccharomyces cerevisiae

UR - http://www.scopus.com/inward/record.url?scp=85047020782&partnerID=8YFLogxK

U2 - 10.15698/mic2018.01.607

DO - 10.15698/mic2018.01.607

M3 - ???researchoutput.researchoutputtypes.contributiontojournal.systematicreview???

C2 - 29354647

AN - SCOPUS:85047020782

SN - 2311-2638

VL - 5

SP - 4

EP - 31

JO - Microbial Cell

JF - Microbial Cell

IS - 1

ER -

Guidelines and recommendations on yeast cell death nomenclature

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