TY - JOUR
T1 - Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study
AU - Hirimuthugoda, Nalini Yasoda
AU - Adeola, Adeniyi C.
AU - Chen, Xing
AU - Perera, Patthamesthrige Wimal Anthony
AU - Gunawardena, Weligalle Wedarallage Dewar Asoka
AU - Gunwardana, Humpita Gamaralalage Thilini Nisanka
AU - Yin, Ting Ting
AU - Wang, Ming Shan
AU - Li, Gui Mei
AU - Peng, Min Sheng
AU - Zhang, Ya Ping
N1 - Publisher Copyright:
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
PY - 2018/1/2
Y1 - 2018/1/2
N2 - The complete mitochondrial genomes of two Sri Lankan junglefowl (Gallus lafayetti: CJF) individuals were sequenced by using next-generation sequencing technique. Samples were collected from Rathnapura and Pelmadulla areas in Sri Lanka. The complete mitochondrial DNA is 16,839 bp in length, with a typical mitogenome structure composed of a non-coding control region, 22 tRNA, two rRNA, and 13 protein-coding genes. Overall base composition is 30% A, 23.9% T, 32.3% C, and 13.6% G indicating high content of 54.0% A + T for both individuals. Phylogenetic analysis reveals that CJF samples cluster with the clade of the green junglefowl (Gallus varius) and red junglefowl (Gallus gallus) than to grey junglefowl (Gallus sonerattii: GyJF). This result can be subsequently used to provide essential information for junglefowl evolution.
AB - The complete mitochondrial genomes of two Sri Lankan junglefowl (Gallus lafayetti: CJF) individuals were sequenced by using next-generation sequencing technique. Samples were collected from Rathnapura and Pelmadulla areas in Sri Lanka. The complete mitochondrial DNA is 16,839 bp in length, with a typical mitogenome structure composed of a non-coding control region, 22 tRNA, two rRNA, and 13 protein-coding genes. Overall base composition is 30% A, 23.9% T, 32.3% C, and 13.6% G indicating high content of 54.0% A + T for both individuals. Phylogenetic analysis reveals that CJF samples cluster with the clade of the green junglefowl (Gallus varius) and red junglefowl (Gallus gallus) than to grey junglefowl (Gallus sonerattii: GyJF). This result can be subsequently used to provide essential information for junglefowl evolution.
KW - Mitochondrial DNA
KW - Sri Lankan junglefowl
KW - next-generation sequencing
KW - phylogenetic analysis
UR - http://www.scopus.com/inward/record.url?scp=85042510398&partnerID=8YFLogxK
U2 - 10.1080/23802359.2017.1422409
DO - 10.1080/23802359.2017.1422409
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AN - SCOPUS:85042510398
SN - 2380-2359
VL - 3
SP - 83
EP - 84
JO - Mitochondrial DNA Part B: Resources
JF - Mitochondrial DNA Part B: Resources
IS - 1
ER -