TY - JOUR
T1 - Assessment of Non-Uniform Sampling Schemes in Solid State NMR of Bacteriophage Viruses
AU - Porat, Gal
AU - Goldbourt, Amir
N1 - Publisher Copyright:
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
PY - 2019/11/1
Y1 - 2019/11/1
N2 - The set of tools offered to NMR spectroscopists has been greatly expanded in the last decades with the development of computer processing power. It has facilitated the use of non-Fourier transform reconstruction algorithms, leading to the ability to acquire data using non-uniform sampling. Its use in solid-state NMR, especially for biological systems, emerges as the next leap toward the analysis and structure prediction of large proteins. Here we applied various non-uniform sampling schemes to assess their performance towards a three-dimensional N−C−C correlation experiment aimed to assign chemical shifts in the coat protein of an intact filamentous bacteriophage fd virus. We show that using the sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction algorithm, biased sampling increases signal-to-noise without compromising linewidths and accuracy of chemical shift determination.
AB - The set of tools offered to NMR spectroscopists has been greatly expanded in the last decades with the development of computer processing power. It has facilitated the use of non-Fourier transform reconstruction algorithms, leading to the ability to acquire data using non-uniform sampling. Its use in solid-state NMR, especially for biological systems, emerges as the next leap toward the analysis and structure prediction of large proteins. Here we applied various non-uniform sampling schemes to assess their performance towards a three-dimensional N−C−C correlation experiment aimed to assign chemical shifts in the coat protein of an intact filamentous bacteriophage fd virus. We show that using the sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction algorithm, biased sampling increases signal-to-noise without compromising linewidths and accuracy of chemical shift determination.
KW - fd virus
KW - filamentous bacteriophages
KW - magic angle spinning
KW - non-uniform sampling
KW - solid-state NMR
UR - http://www.scopus.com/inward/record.url?scp=85073936966&partnerID=8YFLogxK
U2 - 10.1002/ijch.201900058
DO - 10.1002/ijch.201900058
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AN - SCOPUS:85073936966
SN - 0021-2148
VL - 59
SP - 1027
EP - 1038
JO - Israel Journal of Chemistry
JF - Israel Journal of Chemistry
IS - 11-12
ER -