TY - JOUR
T1 - AlphaFold, allosteric, and orthosteric drug discovery
T2 - Ways forward
AU - Nussinov, Ruth
AU - Zhang, Mingzhen
AU - Liu, Yonglan
AU - Jang, Hyunbum
N1 - Publisher Copyright:
© 2023 The Author(s)
PY - 2023/6
Y1 - 2023/6
N2 - Drug discovery is arguably a highly challenging and significant interdisciplinary aim. The stunning success of the artificial intelligence-powered AlphaFold, whose latest version is buttressed by an innovative machine-learning approach that integrates physical and biological knowledge about protein structures, raised drug discovery hopes that unsurprisingly, have not come to bear. Even though accurate, the models are rigid, including the drug pockets. AlphaFold's mixed performance poses the question of how its power can be harnessed in drug discovery. Here we discuss possible ways of going forward wielding its strengths, while bearing in mind what AlphaFold can and cannot do. For kinases and receptors, an input enriched in active (ON) state models can better AlphaFold's chance of rational drug design success.
AB - Drug discovery is arguably a highly challenging and significant interdisciplinary aim. The stunning success of the artificial intelligence-powered AlphaFold, whose latest version is buttressed by an innovative machine-learning approach that integrates physical and biological knowledge about protein structures, raised drug discovery hopes that unsurprisingly, have not come to bear. Even though accurate, the models are rigid, including the drug pockets. AlphaFold's mixed performance poses the question of how its power can be harnessed in drug discovery. Here we discuss possible ways of going forward wielding its strengths, while bearing in mind what AlphaFold can and cannot do. For kinases and receptors, an input enriched in active (ON) state models can better AlphaFold's chance of rational drug design success.
KW - ESMfold
KW - activating mutations
KW - artificial intelligence
KW - inhibitors
KW - machine learning
KW - orthosteric drugs
UR - http://www.scopus.com/inward/record.url?scp=85150443454&partnerID=8YFLogxK
U2 - 10.1016/j.drudis.2023.103551
DO - 10.1016/j.drudis.2023.103551
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C2 - 36907321
AN - SCOPUS:85150443454
SN - 1359-6446
VL - 28
JO - Drug Discovery Today
JF - Drug Discovery Today
IS - 6
M1 - 103551
ER -