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Tamir Tuller

Professor

Former affiliations
 https://orcid.org/0000-0003-4194-7068
20042025

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  • 2024

    Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans

    Davidson, A., Parr, M., Totzeck, F., Churkin, A., Barash, D., Frishman, D. & Tuller, T., 2024, Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings. Scornavacca, C. & Hernández-Rosales, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 248-270 23 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14616 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Revisiting the Effects of MDR1 Variants Using Computational Approaches

    Gutman, T. & Tuller, T., 2024, Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings. Scornavacca, C. & Hernández-Rosales, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 226-247 22 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14616 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2022

    Using Computational Synthetic Biology Tools to Modulate Gene Expression Within a Microbiome

    Chitayat Levi, L., Rippin, I., Ben Tulila, M., Galron, R. & Tuller, T., 2022, Comparative Genomics - 19th International Conference, RECOMB-CG 2022, Proceedings. Jin, L. & Durand, D. (eds.). Springer Science and Business Media Deutschland GmbH, p. 235-259 25 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13234 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2020

    Novel Driver Synonymous Mutations in the Coding Regions of GCB Lymphoma Patients Improve the Transcription Levels of BCL2

    Shami-Schnitzer, O., Zafir, Z. & Tuller, T., 2020, Mathematical and Computational Oncology - Second International Symposium, ISMCO 2020, 2020, Proceedings. Bebis, G., Alekseyev, M., Cho, H., Gevertz, J. & Rodriguez Martinez, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 108-118 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12508 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2017

    Generation and comparative genomics of synthetic dengue viruses

    Goz, E., Tsalenchuck, Y., Benaroya, R. O., Atar, S., Altman, T., Julander, J. & Tuller, T., 2017, Comparative Genomics - 15th International Workshop, RECOMB CG 2017, Proceedings. Nakhleh, L. & Meidanis, J. (eds.). Springer Verlag, p. 31-52 22 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10562 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2016

    Controlling the ribosomal density profile in mRNA translation

    Zarai, Y., Margaliot, M., Sontag, E. D. & Tuller, T., 27 Dec 2016, 2016 IEEE 55th Conference on Decision and Control, CDC 2016. Institute of Electrical and Electronics Engineers Inc., p. 4184-4189 6 p. 7798904. (2016 IEEE 55th Conference on Decision and Control, CDC 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2014

    On three generalizations of contraction

    Sontag, E. D., Margaliot, M. & Tuller, T., 2014, 53rd IEEE Conference on Decision and Control,CDC 2014. February ed. Institute of Electrical and Electronics Engineers Inc., p. 1539-1544 6 p. 7039618. (Proceedings of the IEEE Conference on Decision and Control; vol. 2015-February, no. February).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    8 Scopus citations
  • 2012

    Flow models for efficient simulation and engineering of transcription and translation elongation

    Tuller, T., 2012, 2012 IEEE 27th Convention of Electrical and Electronics Engineers in Israel, IEEEI 2012. 6377121. (2012 IEEE 27th Convention of Electrical and Electronics Engineers in Israel, IEEEI 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2011

    A Ribosome Flow Model for Analyzing Translation Elongation: (Extended Abstract)

    Reuveni, S., Meilijson, I., Kupiec, M., Ruppin, E. & Tuller, T., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 358-360 3 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2009

    Co-evolutionary models for reconstructing ancestral genomic sequences: Computational issues and biological examples

    Tuller, T., Birin, H., Kupiec, M. & Ruppin, E., 2009, Comparative Genomics - International Workshop, RECOMB-CG 2009, Proceedings. p. 164-180 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5817 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2008

    Discovering local patterns of co-evolution

    Felder, Y. & Tuller, T., 2008, Comparative Genomics, International Workshop, RECOMB-CG 2008, Proceedings. p. 55-71 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5267 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Editing Bayesian networks: A new approach for combining prior knowledge and gene expression measurements for researching diseases

    Rubinstein, U., Felder, Y., Ginzbourg, N., Gurevich, M. & Tuller, T., 2008, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 273-277 5 p. 4684902. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Novel phylogenetic network inference by combining maximum likelihood and hidden Markov Models

    Snir, S. & Tuller, T., 2008, Algorithms in Bioinformatics - 8th International Workshop, WABI 2008, Proceedings. p. 354-368 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5251 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2007

    A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance

    Jin, G., Nakhleh, L., Snir, S. & Tuller, T., 2007, Bioinformatics Research and Applications - Third International Symposium, ISBRA 2007, Proceedings. Springer Verlag, p. 61-72 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4463 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Inferring models of rearrangements, recombinations, and horizontal transfers by the minimum evolution criterion

    Birin, H., Gal-Or, Z., Elias, I. & Tuller, T., 2007, Algorithms in Bioinformatics - 7th International Workshop, WABI 2007, Proceedings. Springer Verlag, p. 111-123 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4645 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2006

    Biological networks; comparison, conservation, and evolutionary trees (extended abstract)

    Chor, B. & Tuller, T., 2006, Research in Computational Molecular Biology - 10th Annual International Conference, RECOMB 2006, Proceedings. p. 30-44 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3909 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations
  • 2005

    Time-window analysis of developmental gene expression data with multiple genetic backgrounds

    Tuller, T., Oron, E., Makavy, E., Chamovitz, D. A. & Chor, B., 2005, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). p. 53-64 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3692 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations