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Eytan Ruppin

Professor

Former affiliations
1989 …2025

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  • 2023

    A SSIM Guided cGAN Architecture for Clinically Driven Generative Image Synthesis of Multiplexed Spatial Proteomics Channels

    Saurav, J. R., Nasr, M. S., Shang, H. H., Koomey, P., Robben, M., Huber, M., Weidanz, J., Ryan, B., Ruppin, E., Jiang, P. & Luber, J. M., 2023, CIBCB 2023 - 20th IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology. Institute of Electrical and Electronics Engineers Inc., (CIBCB 2023 - 20th IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    2 Scopus citations
  • 2015

    Functional alignment of metabolic networks

    Mazza, A., Wagner, A., Ruppin, E. & Sharan, R., 2015, Research in Computational Molecular Biology - 19th Annual International Conference, RECOMB 2015, Proceedings. Przytycka, T. M. (ed.). Springer Verlag, p. 243-255 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9029).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2011

    A Ribosome Flow Model for Analyzing Translation Elongation: (Extended Abstract)

    Reuveni, S., Meilijson, I., Kupiec, M., Ruppin, E. & Tuller, T., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 358-360 3 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2009

    Co-evolutionary models for reconstructing ancestral genomic sequences: Computational issues and biological examples

    Tuller, T., Birin, H., Kupiec, M. & Ruppin, E., 2009, Comparative Genomics - International Workshop, RECOMB-CG 2009, Proceedings. p. 164-180 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5817 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2007

    A humanlike predictor of facial attractiveness

    Kagian, A., Dror, G., Leyvand, T., Cohen-Or, D. & Ruppin, E., 2007, Advances in Neural Information Processing Systems 19 - Proceedings of the 2006 Conference. p. 649-656 8 p. (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    66 Scopus citations

  • Comparison of protein-protein interaction confidence assignment schemes

    Suthram, S., Shlomi, T., Ruppin, E., Sharan, R. & Ideker, T., 2007, Systems Biology and Regulatory Genomics - Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, Revised Selected Papers. Springer Verlag, p. 39-50 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4023 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • QNet: A tool for querying protein interaction networks

    Dost, B., Shlomi, T., Gupta, N., Ruppin, E., Bafha, V. & Sharan, R., 2007, Research in Computational Molecular Biology - 11th Annual International Conference, RECOMB 2007, Proceedings. Springer Verlag, p. 1-15 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4453 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    42 Scopus citations
  • 2006

    A Humanlike Predictor of Facial Attractiveness

    Kagian, A., Dror, G., Leyvand, T., Cohen-Or, D. & Ruppin, E., 2006, NIPS 2006: Proceedings of the 19th International Conference on Neural Information Processing Systems. Scholkopf, B., Platt, J. C. & Hofmann, T. (eds.). MIT Press, p. 649-656 8 p. (NIPS 2006: Proceedings of the 19th International Conference on Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    11 Scopus citations

  • Flux-based vs. topology-based similarity of metabolic genes

    Rokhlenko, O., Shlomi, T., Sharan, R., Ruppin, E. & Pinter, R. Y., 2006, Algorithms in Bioinformatics - 6th International Workshop, WABI 2006, Proceedings. Springer Verlag, p. 274-285 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4175 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2005

    Motif extraction and protein classification

    Kunik, V., Solan, Z., Edelman, S., Ruppin, E. & Horn, D., 2005, Proceedings - 2005 IEEE Computational SystemsBioinformatics Conference, CSB 2005. p. 80-85 6 p. 1498009. (Proceedings - 2005 IEEE Computational Systems Bioinformatics Conference, CSB 2005; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    27 Scopus citations
  • 2004

    Evolving imitating agents and the emergence of a neural mirror system

    Borenstein, E. & Ruppin, E., 2004, ARTIFICIAL LIFE IX. Pollack, J., Bedau, M., Husbands, P., Ikegami, T. & Watson, R. (eds.). ONE ROGERS ST, CAMBRIDGE, MA 02142 USA: MIT Press, p. 146-151 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Multi-knockout genetic network analysis: The Rad6 example

    Kaufman, A., Kupiec, M. & Ruppin, E., 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. IEEE Computer Society, p. 332-340 9 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    20 Scopus citations

  • Unsupervised context sensitive language acquisition from a large corpus

    Solan, Z., Horn, D., Ruppin, E. & Edelman, S., 2004, Advances in Neural Information Processing Systems 16 - Proceedings of the 2003 Conference, NIPS 2003. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    10 Scopus citations
  • 2003

    Are there representations in embodied evolved agents? Taking measures

    Avraham, H., Chechik, G. & Ruppin, E., 2003, Advances in Artificial Life. Banzhaf, W., Ziegler, J., Christaller, T., Dittrich, P. & Kim, J. T. (eds.). Springer Verlag, p. 743-752 10 p. (Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science); vol. 2801).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Automatic acquisition and efficient representation of syntactic structures

    Solan, Z., Ruppin, E., Horn, D. & Edelman, S., 2003, Advances in Neural Information Processing Systems 15 - Proceedings of the 2002 Conference, NIPS 2002. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations

  • Evolutionary network minimization: Adaptive implicit pruning of successful agents

    Ganon, Z., Keinan, A. & Ruppin, E., 2003, Advances in Artificial Life. Banzhaf, W., Ziegler, J., Christaller, T., Dittrich, P. & Kim, J. T. (eds.). Springer Verlag, p. 319-327 9 p. (Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science); vol. 2801).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Solving a delayed response task with spiking and McCulloch-pitts agents

    Saggie, K., Keinan, A. & Ruppin, E., 2003, Advances in Artificial Life. Banzhaf, W., Ziegler, J., Christaller, T., Dittrich, P. & Kim, J. T. (eds.). Springer Verlag, p. 199-208 10 p. (Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science); vol. 2801).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2002

    Automatic Acquisition and Efficient Representation of Syntactic Structures

    Solan, Z., Ruppin, E., Horn, D. & Edelman, S., 2002, NIPS 2002: Proceedings of the 15th International Conference on Neural Information Processing Systems. Becker, S., Thrun, S. & Obermayer, K. (eds.). MIT Press, p. 91-98 8 p. (NIPS 2002: Proceedings of the 15th International Conference on Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations
  • 2001

    Evolution of reinforcement learning in uncertain environments: Emergence of risk-aversion and matching

    Niv, Y., Joel, D., Meilijson, I. & Ruppin, E., 2001, Advances in Artificial Life - 6th European Conference, ECAL 2001, Proceedings. Kelemen, J. & Sosik, P. (eds.). Springer Verlag, p. 252-261 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2159).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Placing search in context: The concept revisited

    Finkelstein, L., Gabrilovich, E., Matias, Y., Rivlin, E., Solan, Z., Wolfman, G. & Ruppin, E., 1 Apr 2001, Proceedings of the 10th International Conference on World Wide Web, WWW 2001. Association for Computing Machinery, Inc, p. 406-414 9 p. (Proceedings of the 10th International Conference on World Wide Web, WWW 2001).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    668 Scopus citations

  • Understanding the agent’s brain: A quantitative approach

    Aharonov, R., Meilijson, I. & Ruppin, E., 2001, Advances in Artificial Life - 6th European Conference, ECAL 2001, Proceedings. Kelemen, J. & Sosik, P. (eds.). Springer Verlag, p. 216-225 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2159).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Who does what? A novel algorithm to determine function localization

    Aharonov-Barki, R., Meilijson, I. & Ruppin, E., 2001, Advances in Neural Information Processing Systems 13 - Proceedings of the 2000 Conference, NIPS 2000. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2000

    Distributed synchrony of spiking neurons in a Hebbian cell assembly

    Horn, D., Levy, N., Meilijson, I. & Ruppin, E., 2000, Advances in Neural Information Processing Systems 12 - Proceedings of the 1999 Conference, NIPS 1999. Neural information processing systems foundation, p. 129-135 7 p. (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    18 Scopus citations
  • 1999

    Neuronal regulation implements efficient synaptic pruning

    Chechik, G., Meilijson, I. & Ruppin, E., 1999, Advances in Neural Information Processing Systems 11 - Proceedings of the 1998 Conference, NIPS 1998. Neural information processing systems foundation, p. 97-103 7 p. (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Spontaneous evolution of command neurons, place cells and memory mechanisms in autonomous agents

    Aharonov-Barki, R., Beker, T. & Ruppin, E., 1999, Advances in Artificial Life - 5th European Conference, ECAL 1999, Proceedings. Floreano, D., Nicoud, J.-D. & Mondada, F. (eds.). Springer Verlag, p. 246-255 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1674).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations
  • 1998

    Multi-modular associative memory

    Levy, N., Horn, D. & Ruppin, E., 1998, Advances in Neural Information Processing Systems 10 - Proceedings of the 1997 Conference, NIPS 1997. Neural information processing systems foundation, p. 52-58 7 p. (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • On parallel versus serial processing: A computational study of visual search

    Cohen, E. & Ruppin, E., 1998, Advances in Neural Information Processing Systems 10 - Proceedings of the 1997 Conference, NIPS 1997. Neural information processing systems foundation, p. 10-16 7 p. (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review