Eran Halperin

2017

Genome-wide methylation data mirror ancestry information

Rahmani, E., Shenhav, L., Schweiger, R., Yousefi, P., Huen, K., Eskenazi, B., Eng, C., Huntsman, S., Hu, D., Galanter, J., Oh, S. S., Waldenberger, M., Strauch, K., Grallert, H., Meitinger, T., Gieger, C., Holland, N., Burchard, E. G., Zaitlen, N. & Halperin, E., 3 Jan 2017, In: Epigenetics and Chromatin. 10, 1, 12 p., 1.

Research output: Contribution to journal › Article › peer-review

Open Access

65 Scopus citations

GLINT: A user-friendly toolset for the analysis of high-throughput DNA-methylation array data

Rahmani, E., Yedidim, R., Shenhav, L., Schweiger, R., Weissbrod, O., Zaitlen, N. & Halperin, E., 15 Jun 2017, In: Bioinformatics. 33, 12, p. 1870-1872 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

41 Scopus citations

Heritable bovine rumen bacteria are phylogenetically related and correlated with the cow’s capacity to harvest energy from its feed

Sasson, G., Ben-Shabat, S. K., Seroussi, E., Doron-Faigenboim, A., Shterzer, N., Yaacoby, S., Miller, M. E. B., White, B. A., Halperin, E. & Mizrahi, I., 1 Jul 2017, In: mBio. 8, 4, e00703-17.

Research output: Contribution to journal › Article › peer-review

Open Access

122 Scopus citations

Recycler: An algorithm for detecting plasmids from de novo assembly graphs

Rozov, R., Kav, A. B., Bogumil, D., Shterzer, N., Halperin, E., Mizrahi, I. & Shamir, R., 15 Feb 2017, In: Bioinformatics. 33, 4, p. 475-482 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

94 Scopus citations

Rheumatoid Arthritis Naive T Cells Share Hypermethylation Sites With Synoviocytes

Rhead, B., Holingue, C., Cole, M., Shao, X., Quach, H. L., Quach, D., Shah, K., Sinclair, E., Graf, J., Link, T., Harrison, R., Rahmani, E., Halperin, E., Wang, W., Firestein, G. S., Barcellos, L. F. & Criswell, L. A., 1 Mar 2017, In: Arthritis and Rheumatology. 69, 3, p. 550-559 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

47 Scopus citations

RL-SKAT: An exact and efficient score test for heritability and set tests

Schweiger, R., Weissbrod, O., Rahmani, E., Müller-Nurasyid, M., Kunze, S., Gieger, C., Waldenberger, M., Rosset, S. & Halperin, E., Dec 2017, In: Genetics. 207, 4, p. 1275-1283 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

15 Scopus citations

The effects of migration and assortative mating on admixture linkage disequilibrium

Zaitlen, N., Huntsman, S., Hu, D., Spear, M., Eng, C., Oh, S. S., White, M. J., Mak, A., Davis, A., Meade, K., Brigino-Buenaventura, E., LeNoir, M. A., Bibbins-Domingo, K., Burchard, E. G. & Halperin, E., Jan 2017, In: Genetics. 205, 1, p. 375-383 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

2016

Fast and Accurate Construction of Confidence Intervals for Heritability

Schweiger, R., Kaufman, S., Laaksonen, R., Kleber, M. E., März, W., Eskin, E., Rosset, S. & Halperin, E., 2 Jun 2016, In: American Journal of Human Genetics. 98, 6, p. 1181-1192 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function

Pattaro, C., Teumer, A., Gorski, M., Chu, A. Y., Li, M., Mijatovic, V., Garnaas, M., Tin, A., Sorice, R., Li, Y., Taliun, D., Olden, M., Foster, M., Yang, Q., Chen, M. H., Pers, T. H., Johnson, A. D., Ko, Y. A., Fuchsberger, C. & Tayo, B. & 678 others, Nalls, M., Feitosa, M. F., Isaacs, A., Dehghan, A., D'Adamo, P., Adeyemo, A., Dieffenbach, A. K., Zonderman, A. B., Nolte, I. M., Van Der Most, P. J., Wright, A. F., Shuldiner, A. R., Morrison, A. C., Hofman, A., Smith, A. V., Dreisbach, A. W., Franke, A., Uitterlinden, A. G., Metspalu, A., Tonjes, A., Lupo, A., Robino, A., Johansson, Å., Demirkan, A., Kollerits, B., Freedman, B. I., Ponte, B., Oostra, B. A., Paulweber, B., Krämer, B. K., Mitchell, B. D., Buckley, B. M., Peralta, C. A., Hayward, C., Helmer, C., Rotimi, C. N., Shaffer, C. M., Müller, C., Sala, C., Van Duijn, C. M., Saint-Pierre, A., Ackermann, D., Shriner, D., Ruggiero, D., Toniolo, D., Lu, Y., Cusi, D., Czamara, D., Ellinghaus, D., Siscovick, D. S., Ruderfer, D., Gieger, C., Grallert, H., Rochtchina, E., Atkinson, E. J., Holliday, E. G., Boerwinkle, E., Salvi, E., Bottinger, E. P., Murgia, F., Rivadeneira, F., Ernst, F., Kronenberg, F., Hu, F. B., Navis, G. J., Curhan, G. C., Ehret, G. B., Homuth, G., Coassin, S., Thun, G. A., Pistis, G., Gambaro, G., Malerba, G., Montgomery, G. W., Eiriksdottir, G., Jacobs, G., Li, G., Wichmann, H. E., Campbell, H., Schmidt, H., Wallaschofski, H., Völzke, H., Brenner, H., Kroemer, H. K., Kramer, H., Lin, H., Leach, I. M., Ford, I., Guessous, I., Rudan, I., Prokopenko, I., Borecki, I., Heid, I. M., Kolcic, I., Persico, I., Jukema, J. W., Wilson, J. F., Felix, J. F., Divers, J., Lambert, J. C., Stafford, J. M., Gaspoz, J. M., Smith, J. A., Faul, J. D., Wang, J. J., Ding, J., Hirschhorn, J. N., Attia, J., Whitfield, J. B., Chalmers, J., Viikari, J., Coresh, J., Denny, J. C., Karjalainen, J., Fernandes, J. K., Endlich, K., Butterbach, K., Keene, K. L., Lohman, K., Portas, L., Launer, L. J., Lyytikäinen, L. P., Yengo, L., Franke, L., Ferrucci, L., Rose, L. M., Kedenko, L., Rao, M., Struchalin, M., Kleber, M. E., Cavalieri, M., Haun, M., Cornelis, M. C., Ciullo, M., Pirastu, M., De Andrade, M., McEvoy, M. A., Woodward, M., Adam, M., Cocca, M., Nauck, M., Imboden, M., Waldenberger, M., Pruijm, M., Metzger, M., Stumvoll, M., Evans, M. K., Sale, M. M., Kähönen, M., Boban, M., Bochud, M., Rheinberger, M., Verweij, N., Bouatia-Naji, N., Martin, N. G., Hastie, N., Probst-Hensch, N., Soranzo, N., Devuyst, O., Raitakari, O., Gottesman, O., Franco, O. H., Polasek, O., Gasparini, P., Munroe, P. B., Ridker, P. M., Mitchell, P., Muntner, P., Meisinger, C., Smit, J. H., Abecasis, G. R., Adair, L. S., Alexander, M., Altshuler, D., Amin, N., Arking, D. E., Arora, P., Aulchenko, Y., Bakker, S. J. L., Bandinelli, S., Barroso, I., Beckmann, J. S., Beilby, J. P., Bergman, R. N., Bergmann, S., Bis, J. C., Boehnke, M., Bonnycastle, L. L., Bornstein, S. R., Bots, M. L., Bragg-Gresham, J. L., Brand, S. M., Brand, E., Braund, P. S., Brown, M. J., Burton, P. R., Casas, J. P., Caulfield, M. J., Chakravarti, A., Chambers, J. C., Chandak, G. R., Chang, Y. P. C., Charchar, F. J., Chaturvedi, N., Cho, Y. S., Clarke, R., Collins, F. S., Collins, R., Connell, J. M., Cooper, J. A., Cooper, M. N., Cooper, R. S., Corsi, A. M., Dörr, M., Dahgam, S., Danesh, J., Smith, G. D., Day, I. N. M., Deloukas, P., Denniff, M., Dominiczak, A. F., Dong, Y., Doumatey, A., Elliott, P., Elosua, R., Erdmann, J., Eyheramendy, S., Farrall, M., Fava, C., Forrester, T., Fowkes, F. G. R., Fox, E. R., Frayling, T. M., Galan, P., Ganesh, S. K., Garcia, M., Gaunt, T. R., Glazer, N. L., Go, M. J., Goel, A., Grässler, J., Grobbee, D. E., Groop, L., Guarrera, S., Guo, X., Hadley, D., Hamsten, A., Han, B. G., Hardy, R., Hartikainen, A. L., Heath, S., Heckbert, S. R., Hedblad, B., Hercberg, S., Hernandez, D., Hicks, A. A., Hilton, G., Hingorani, A. D., Hoffman Bolton, J. A., Hopewell, J. C., Howard, P., Humphries, S. E., Hunt, S. C., Hveem, K., Ikram, M. A., Islam, M., Iwai, N., Jarvelin, M. R., Jackson, A. U., Jafar, T. H., Janipalli, C. S., Johnson, T., Kathiresan, S., Khaw, K. T., Kim, H. L., Kinra, S., Kita, Y., Kivimaki, M., Kooner, J. S., Kumar, M. J. K., Kuh, D., Kulkarni, S. R., Kumari, M., Kuusisto, J., Kuznetsova, T., Laakso, M., Laan, M., Laitinen, J., Lakatta, E. G., Langefeld, C. D., Larson, M. G., Lathrop, M., Lawlor, D. A., Lawrence, R. W., Lee, J. Y., Lee, N. R., Levy, D., Li, Y., Longstreth, W. T., Luan, J., Lucas, G., Ludwig, B., Mangino, M., Mani, K. R., Marmot, M. G., Mattace-Raso, F. U. S., Matullo, G., McArdle, W. L., McKenzie, C. A., Meitinger, T., Melander, O., Meneton, P., Meschia, J. F., Miki, T., Milaneschi, Y., Mohlke, K. L., Mooser, V., Morken, M. A., Morris, R. W., Mosley, T. H., Najjar, S., Narisu, N., Newton-Cheh, C., Nguyen, K. D. H., Nilsson, P., Nyberg, F., O'Donnell, C. J., Ogihara, T., Ohkubo, T., Okamura, T., Ong, R. T. H., Ongen, H., Onland-Moret, N. C., O'Reilly, P. F., Org, E., Orru, M., Palmas, W., Palmen, J., Palmer, L. J., Palmer, N. D., Parker, A. N., Peden, J. F., Peltonen, L., Perola, M., Pihur, V., Platou, C. G. P., Plump, A., Prabhakaran, D., Psaty, B. M., Raffel, L. J., Rao, D. C., Rasheed, A., Ricceri, F., Rice, K. M., Rosengren, A., Rotter, J. I., Rudock, M. E., Sõber, S., Salako, T., Saleheen, D., Salomaa, V., Samani, N. J., Schwartz, S. M., Schwarz, P. E. H., Scott, L. J., Scott, J., Scuteri, A., Sehmi, J. S., Seielstad, M., Seshadri, S., Sharma, P., Shaw-Hawkins, S., Shi, G., Shrine, N. R. G., Sijbrands, E. J. G., Sim, X., Singleton, A., Sjögren, M., Smith, N. L., Artigas, M. S., Spector, T. D., Staessen, J. A., Stancakova, A., Steinle, N. I., Strachan, D. P., Stringham, H. M., Sun, Y. V., Swift, A. J., Tabara, Y., Tai, E. S., Talmud, P. J., Taylor, A., Terzic, J., Thelle, D. S., Tobin, M. D., Tomaszewski, M., Tripathy, V., Tuomilehto, J., Tzoulaki, I., Uda, M., Ueshima, H., Uiterwaal, C. S. P. M., Umemura, S., Van Der Harst, P., Van Der Schouw, Y. T., Van Gilst, W. H., Vartiainen, E., Vasan, R. S., Veldre, G., Verwoert, G. C., Viigimaa, M., Vinay, D. G., Vineis, P., Voight, B. F., Vollenweider, P., Wagenknecht, L. E., Wain, L. V., Wang, X., Wang, T. J., Wareham, N. J., Watkins, H., Weder, A. B., Whincup, P. H., Wiggins, K. L., Witteman, J. C. M., Wong, A., Wu, Y., Yajnik, C. S., Yao, J., Young, J. H., Zelenika, D., Zhai, G., Zhang, W., Zhang, F., Zhao, J. H., Zhu, H., Zhu, X., Zitting, P., Zukowska-Szczechowska, E., Okada, Y., Wu, J. Y., Gu, D., Takeuchi, F., Takahashi, A., Maeda, S., Tsunoda, T., Chen, P., Lim, S. C., Wong, T. Y., Liu, J., Young, T. L., Aung, T., Teo, Y. Y., Kim, Y. J., Kang, D., Chen, C. H., Tsai, F. J., Chang, L. C., Fann, S. J. C., Mei, H., Hixson, J. E., Chen, S., Katsuya, T., Isono, M., Albrecht, E., Yamamoto, K., Kubo, M., Nakamura, Y., Kamatani, N., Kato, N., He, J., Chen, Y. T., Tanaka, T., Reilly, M. P., Schunkert, H., Assimes, T. L., Hall, A., Hengstenberg, C., König, I. R., Laaksonen, R., McPherson, R., Thompson, J. R., Thorsteinsdottir, U., Ziegler, A., Absher, D., Chen, L., Cupples, L. A., Halperin, E., Li, M., Musunuru, K., Preuss, M., Schillert, A., Thorleifsson, G., Wells, G. A., Holm, H., Roberts, R., Stewart, A. F. R., Fortmann, S., Go, A., Hlatky, M., Iribarren, C., Knowles, J., Myers, R., Quertermous, T., Sidney, S., Risch, N., Tang, H., Blankenberg, S., Schnabel, R., Sinning, C., Lackner, K. J., Tiret, L., Nicaud, V., Cambien, F., Bickel, C., Rupprecht, H. J., Perret, C., Proust, C., Münzel, T. F., Barbalic, M., Chen, I. Y. D., Demissie-Banjaw, S., Folsom, A., Lumley, T., Marciante, K., Taylor, K. D., Volcik, K., Gretarsdottir, S., Gulcher, J. R., Kong, A., Stefansson, K., Thorgeirsson, G., Andersen, K., Fischer, M., Grosshennig, A., Linsel-Nitschke, P., Stark, K., Schreiber, S., Aherrahrou, Z., Bruse, P., Doering, A., Klopp, N., Diemert, P., Loley, C., Medack, A., Nahrstedt, J., Peters, A., Wagner, A. K., Willenborg, C., Böhm, B. O., Dobnig, H., Grammer, T. B., Hoffmann, M. M., Meinitzer, A., Winkelmann, B. R., Pilz, S., Renner, W., Scharnagl, H., Stojakovic, T., Tomaschitz, A., Winkler, K., Guiducci, C., Burtt, N., Gabriel, S. B., Dandona, S., Jarinova, O., Qu, L., Wilensky, R., Matthai, W., Hakonarson, H. H., Devaney, J., Burnett, M. S., Pichard, A. D., Kent, K. M., Satler, L., Lindsay, J. M., Waksman, R., Knouff, C. W., Waterworth, D. M., Walker, M. C., Epstein, S. E., Rader, D. J., Nelson, C. P., Wright, B. J., Balmforth, A. J., Ball, S. G., Loehr, L. R., Rosamond, W. D., Benjamin, E., Haritunians, T., Couper, D., Murabito, J., Wang, Y. A., Stricker, B. H., Chang, P. P., Willerson, J. T., Felix, S. B., Watzinger, N., Aragam, J., Zweiker, R., Lind, L., Rodeheffer, R. J., Greiser, K. H., Deckers, J. W., Stritzke, J., Ingelsson, E., Kullo, I., Haerting, J., Reffelmann, T., Redfield, M. M., Werdan, K., Mitchell, G. F., Arnett, D. K., Gottdiener, J. S., Blettner, M., Friedrich, N., Kovacs, P., Wild, P. S., Froguel, P., Rettig, R., Mägi, R., Biffar, R., Schmidt, R., Middelberg, R. P. S., Carroll, R. J., Penninx, B. W., Scott, R. J., Katz, R., Sedaghat, S., Wild, S. H., Kardia, S. L. R., Ulivi, S., Hwang, S. J., Enroth, S., Kloiber, S., Trompet, S., Stengel, B., Hancock, S. J., Turner, S. T., Rosas, S. E., Stracke, S., Harris, T. B., Zeller, T., Zemunik, T., Lehtimäki, T., Illig, T., Aspelund, T., Nikopensius, T., Esko, T., Tanaka, T., Gyllensten, U., Völker, U., Emilsson, V., Vitart, V., Aalto, V., Gudnason, V., Chouraki, V., Chen, W. M., Igl, W., März, W., Koenig, W., Lieb, W., Loos, R. J. F., Liu, Y., Snieder, H., Pramstaller, P. P., Parsa, A., O'Connell, J. R., Susztak, K., Hamet, P., Tremblay, J., De Boer, I. H., Böger, C. A., Goessling, W., Chasman, D. I., Köttgen, A., Kao, W. H. L. & Fox, C. S., 21 Jan 2016, In: Nature Communications. 7, 10023.

Research output: Contribution to journal › Article › peer-review

Open Access

402 Scopus citations

Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies

Rahmani, E., Zaitlen, N., Baran, Y., Eng, C., Hu, D., Galanter, J., Oh, S., Burchard, E. G., Eskin, E., Zou, J. & Halperin, E., 1 May 2016, In: Nature Methods. 13, 5, p. 443-445 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

188 Scopus citations

The genetic history of Cochin Jews from India

Waldman, Y. Y., Biddanda, A., Dubrovsky, M., Campbell, C. L., Oddoux, C., Friedman, E., Atzmon, G., Halperin, E., Ostrer, H. & Keinan, A., 1 Oct 2016, In: Human Genetics. 135, 10, p. 1127-1143 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

The genetics of Bene Israel from India reveals both substantial Jewish and Indian ancestry

Waldman, Y. Y., Biddanda, A., Davidson, N. R., Billing-Ross, P., Dubrovsky, M., Campbell, C. L., Oddoux, C., Friedman, E., Atzmon, G., Halperin, E., Ostrer, H. & Keinan, A., Mar 2016, In: PLoS ONE. 11, 3, e0152056.

Research output: Contribution to journal › Article › peer-review

Open Access

15 Scopus citations

2015

A Note on the Relations between Spatio-Genetic Models

Baran, Y. & Halperin, E., 1 Oct 2015, In: Journal of Computational Biology. 22, 10, p. 905-917 13 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Characterization of whole-genome autosomal differences of DNA methylation between men and women

Singmann, P., Shem-Tov, D., Wahl, S., Grallert, H., Fiorito, G., Shin, S. Y., Schramm, K., Wolf, P., Kunze, S., Baran, Y., Guarrera, S., Vineis, P., Krogh, V., Panico, S., Tumino, R., Kretschmer, A., Gieger, C., Peters, A., Prokisch, H. & Relton, C. L. & 4 others, Matullo, G., Illig, T., Waldenberger, M. & Halperin, E., Dec 2015, In: Epigenetics and Chromatin. 8, 1, 35.

Research output: Contribution to journal › Article › peer-review

Open Access

135 Scopus citations

Inferring parental genomic ancestries using pooled semi-Markov processes

Zou, J. Y., Halperin, E., Burchard, E. & Sankararaman, S., 15 Jun 2015, In: Bioinformatics. 31, 12, p. i190-i196

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

2014

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge

Brownstein, C. A., Beggs, A. H., Homer, N., Merriman, B., Yu, T. W., Flannery, K. C., DeChene, E. T., Towne, M. C., Savage, S. K., Price, E. N., Holm, I. A., Luquette, L. J., Lyon, E., Majzoub, J., Neupert, P., McCallie, D., Szolovits, P., Willard, H. F., Mendelsohn, N. J. & Temme, R. & 178 others, Finkel, R. S., Yum, S. W., Medne, L., Sunyaev, S. R., Adzhubey, I., Cassa, C. A., De Bakker, P. I. W., Duzkale, H., Dworzyński, P., Fairbrother, W., Francioli, L., Funke, B. H., Giovanni, M. A., Handsaker, R. E., Lage, K., Lebo, M. S., Lek, M., Leshchiner, I., MacArthur, D. G., McLaughlin, H. M., Murray, M. F., Pers, T. H., Polak, P. P., Raychaudhuri, S., Rehm, H. L., Soemedi, R., Stitziel, N. O., Vestecka, S., Supper, J., Gugenmus, C., Klocke, B., Hahn, A., Schubach, M., Menzel, M., Biskup, S., Freisinger, P., Deng, M., Braun, M., Perner, S., Smith, R. J. H., Andorf, J. L., Huang, J., Ryckman, K., Sheffield, V. C., Stone, E. M., Bair, T., Ann Black-Ziegelbein, E., Braun, T. A., Darbro, B., DeLuca, A. P., Kolbe, D. L., Scheetz, T. E., Shearer, A. E., Sompallae, R., Wang, K., Bassuk, A. G., Edens, E., Mathews, K., Moore, S. A., Shchelochkov, O. A., Trapane, P., Bossler, A., Campbell, C. A., Heusel, J. W., Kwitek, A., Maga, T., Panzer, K., Wassink, T., Van Daele, D., Azaiez, H., Booth, K., Meyer, N., Segal, M. M., Williams, M. S., Tromp, G., White, P., Corsmeier, D., Fitzgerald-Butt, S., Herman, G., Lamb-Thrush, D., McBride, K. L., Newsom, D., Pierson, C. R., Rakowsky, A. T., Maver, A., Lovrečić, L., Palandačić, A., Peterlin, B., Torkamani, A., Wedell, A., Huss, M., Alexeyenko, A., Lindvall, J. M., Magnusson, M., Nilsson, D., Stranneheim, H., Taylan, F., Gilissen, C., Hoischen, A., Van Bon, B., Yntema, H., Nelen, M., Zhang, W., Sager, J., Zhang, L., Blair, K., Kural, D., Cariaso, M., Lennon, G. G., Javed, A., Agrawal, S., Ng, P. C., Sandhu, K. S., Krishna, S., Veeramachaneni, V., Isakov, O., Halperin, E., Friedman, E., Shomron, N., Glusman, G., Roach, J. C., Caballero, J., Cox, H. C., Mauldin, D., Ament, S. A., Rowen, L., Richards, D. R., Anthony San Lucas, F., Gonzalez-Garay, M. L., Thomas Caskey, C., Bai, Y., Huang, Y., Fang, F., Zhang, Y., Wang, Z., Barrera, J., Garcia-Lobo, J. M., González-Lamuño, D., Llorca, J., Rodriguez, M. C., Varela, I., Reese, M. G., De La Vega, F. M., Kiruluta, E., Cargill, M., Hart, R. K., Sorenson, J. M., Lyon, G. J., Stevenson, D. A., Bray, B. E., Moore, B. M., Eilbeck, K., Yandell, M., Zhao, H., Hou, L., Chen, X., Yan, X., Chen, M., Li, C., Yang, C., Gunel, M., Li, P., Kong, Y., Alexander, A. C., Albertyn, Z. I., Boycott, K. M., Bulman, D. E., Gordon, P. M. K., Micheil Innes, A., Knoppers, B. M., Majewski, J., Marshall, C. R., Parboosingh, J. S., Sawyer, S. L., Samuels, M. E., Schwartzentruber, J., Kohane, I. S. & Margulies, D. M., 2014, In: Genome Biology. 15, 3, 18 p., R53.

Research output: Contribution to journal › Article › peer-review

Open Access

93 Scopus citations

EPIQ - Efficient detection of SNP-SNP epistatic interactions for quantitative traits

Arkin, Y., Rahmani, E., Kleber, M. E., Laaksonen, R., März, W. & Halperin, E., 15 Jun 2014, In: Bioinformatics. 30, 12, p. I19-I25

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

Fast lossless compression via cascading Bloom filters

Rozov, R., Shamir, R. & Halperin, E., 10 Sep 2014, In: BMC Bioinformatics. 15, S7.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE)

Shem-Tov, D. & Halperin, E., Jun 2014, In: PLoS Computational Biology. 10, 6, e1003610.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences

Colonna, V., Ayub, Q., Chen, Y., Pagani, L., Luisi, P., Pybus, M., Garrison, E., Xue, Y., Tyler-Smith, C., Abecasis, G. R., Auton, A., Brooks, L. D., Depristo, M. A., Durbin, R. M., Handsaker, R. E., Kang, H. M., Marth, G. T., McVean, G. A., Altshuler, D. M. & Bentley, D. R. & 364 others, Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Li, Z., Liu, X., Lu, Y., Ma, X., Su, Z., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Zhou, Y., Gupta, N., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Fulton, R., Weinstock, G. M., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Coin, L. J., Fang, L., Li, Q., Lin, H., Liu, B., Luo, R., Qin, N., Shao, H., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Ward, A. N., Wu, J., Zhang, M., Griffin, L., Hsieh, C. H., Mills, R. E., Shi, X., von Grotthuss, M., Zhang, C., Daly, M. J., Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Kim, K. C., Rausch, T., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Cheetham, R., Cox, T., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Batzer, M. A., Konkel, M. K., Walker, J. A., Macarthur, D. G., Lek, M., Herwig, R., Shriver, M. D., Bustamante, C. D., Byrnes, J. K., De La Vega, F. M., Gravel, S., Kenny, E. E., Kidd, J. M., Lacroute, P., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Bafna, V., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. P., Anderson, P., Angius, A., Bigham, A., Blackwell, T., Busonero, F., Cucca, F., Fuchsberger, C., Jones, C., Lyons, R., Maschio, A., Porcu, E., Reinier, F., Sanna, S., Schlessinger, D., Sidore, C., Tan, A., Trost, M. K., Awadalla, P., Hodgkinson, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Ko, A., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Dooling, D., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Coffey, A. J., Huang, N., Jostins, L., Li, H., Scally, A., Walter, K., Zhang, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Habegger, L., Harmanci, A. O., Jin, M., Khurana, E., Mu, X. J., Sisu, C., Degenhardt, J., Stütz, A. M., Church, D., Michaelson, J. J., Blackburne, B., Lindsay, S. J., Ning, Z., Balasubramanian, S., Frankish, A., Harrow, J., Balasubramanian, S., Kalra, D., Hale, W., Fowler, G., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Vaughan, B., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'sullivan, C., Ostapchuk, Y., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Gharani, N., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Reich, D., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Toji, L. H., Via, M., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Ming, C. Z., Yang, G., You, C. J., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Duncanson, A., Dunn, M., Guyer, M. S. & Peterson, J. L., 30 Jun 2014, In: Genome Biology. 15, 6, R88.

Research output: Contribution to journal › Article › peer-review

Open Access

60 Scopus citations

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Delaneau, O., Marchini, J., McVeanh, G. A., Donnelly, P., Lunter, G., Myers, S., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Kerasidou, A., Churchhouse, C., Altshuler, D. M., Gabriel, S. B., Lander, E. S., Gupta, N., Daly, M. J., DePristo, M. A. & Banks, E. & 362 others, Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Li, H., Reich, D., Durbin, R. M., Hurles, M. E., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Ayub, Q., Chen, Y., Coffey, A. J., Colonna, V., Huang, N., Jostins, L., Scally, A., Walter, K., Xue, Y., Zhang, Y., Blackburne, B., Lindsay, S. J., Ning, Z., Frankish, A., Harrow, J., Chris, T. S., Abecasis, G. R., Kang, H. M., Anderson, P., Blackwell, T., Busonero, F., Fuchsberger, C., Jun, G., Maschio, A., Porcu, E., Sidore, C., Tan, A., Trost, M. K., Bentley, D. R., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., Murray, L., Shaw, R., Chakravarti, A., Clark, A. G., Keinan, A., Rodriguez-Flores, J. L., De LaVega, F. M., Degenhardt, J., Eichler, E. E., Flicek, P., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R. S., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Gibbs, R. A., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Fowler, G., Hale, W., Kalra, D., Green, E. D., Knoppers, B. M., Korbel, J. O., Rausch, T., Sttz, A. M., Lee, C., Griffin, L., Hsieh, C. H., Mills, R. E., Von Grotthuss, M., Zhang, C., Shi, X., Lehrach, H., Sudbrak, R., Amstislavskiy, V. S., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Herwig, S. R., Mardis, E. R., Wilson, R. K., Fulton, L., Fulton, R., Weinstock, G. M., Chinwalla, A., Ding, L., Dooling, D., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Marth, G. T., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Ward, A. N., Wu, J., Zhang, M., Nickerson, D. A., Alkan, C., Hormozdiari, F., Ko, A., Sudmant, P. H., Schmidt, J. P., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Sherry, S. T., Xiao, C., Church, D., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Wang, J., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Liu, X., Lu, Y., Ma, X., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Lachlan, H., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Shao, H., Wang, B., Xie, Y., Ye, C., Yu, C., Zheng, H., Zhu, H., Cai, H., Cao, H., Su, Y., Tian, Z., Yang, H., Yang, L., Zhu, J., Cai, Z., Wang, J., Albrecht, M. W., Borodina, T. A., Auton, A., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Kim, K. C., Gottipati, S., Jones, D., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Kahn, S., Ye, K., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Shriver, M. D., Bustamante, C. D., Gravel, S., Kenny, E. E., Kidd, J. M., Lacroute, P., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Henn, B., Sandoval, K., Byrnes, J. K., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Homer, N., Squire, K., Sebat, J., Bafna, V., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Liu, X., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. P., Angius, A., Cucca, F., Sanna, S., Bigham, A., Jones, C., Reinier, F., Li, Y., Lyons, R., Schlessinger, D., Awadalla, P., Hodgkinson, A., Oleksyk, T. K., Martinez-Cruzado, J. C., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Hajirasouliha, I., Chen, K., Albers, C. A., Gerstein, M. B., Abyzov, A., Chen, J., Fu, Y., Habegger, L., Harmanci, A. O., Mu, X. J., Sisu, C., Balasubramanian, S., Jin, M., Khurana, E., Clarke, D., Michaelson, J. J., OSullivan, C., Barnes, K. C., Gharani, N., Toji, L. H., Gerry, N., Kaye, J. S., Kent, A., Mathias, R., Ossorio, P. N., Parker, M., Rotimi, C. N., Royal, C. D., Tishkoff, S., Via, M., Bodmer, W., Bedoya, G., Yang, G., You, C. J., Garcia-Montero, A., Orfao, A., Dutil, J., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Guyer, M. S., Peterson, J. L., Duncanson, A., Dunn, M. & Peltonen, L., 13 Jun 2014, In: Nature Communications. 5, 3934.

Research output: Contribution to journal › Article › peer-review

Open Access

303 Scopus citations

Relation of genetic profile and novel circulating biomarkers with coronary plaque phenotype as determined by intravascular ultrasound: Rationale and design of the ATHEROREMO-IVUS study

De Boer, S. P. M., Cheng, J. M., Garcia-Garcia, H. M., Oemrawsingh, R. M., Van Geuns, R. J., Regar, E., Zijlstra, F., Laaksonen, R., Halperin, E., Kleber, M. E., Koenig, W., Boersma, E. & Serruys, P. W., 1 Dec 2014, In: EuroIntervention. 10, 8, p. 953-960 8 p.

Research output: Contribution to journal › Article › peer-review

24 Scopus citations

2013

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation

Pasaniuc, B., Sankararaman, S., Torgerson, D. G., Gignoux, C., Zaitlen, N., Eng, C., Rodriguez-Cintron, W., Chapela, R., Ford, J. G., Avila, P. C., Rodriguez-Santana, J., Chen, G. K., Le Marchand, L., Henderson, B., Reich, D., Haiman, C. A., Gonzàlez Burchard, E. & Halperin, E., 1 Jun 2013, In: Bioinformatics. 29, 11, p. 1407-1415 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

31 Scopus citations

CNVeM: Copy number variation detection using uncertainty of read mapping

Wang, Z., Hormozdiari, F., Yang, W. Y., Halperin, E. & Eskin, E., 1 Mar 2013, In: Journal of Computational Biology. 20, 3, p. 224-236 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

EALPS: Estimating abundance levels in pooled sequencing using available genotyping data

Eskin, I., Hormozdiari, F., Conde, L., Riby, J., Skibola, C. F., Eskin, E. & Halperin, E., 1 Nov 2013, In: Journal of Computational Biology. 20, 11, p. 861-877 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Enhanced localization of genetic samples through linkage-disequilibrium correction

Baran, Y., Quintela, I., Carracedo, Á., Pasaniuc, B. & Halperin, E., 6 Jun 2013, In: American Journal of Human Genetics. 92, 6, p. 882-894 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Identifying personal genomes by surname inference

Gymrek, M., McGuire, A. L., Golan, D., Halperin, E. & Erlich, Y., 18 Jan 2013, In: Science. 339, 6117, p. 321-324 4 p.

Research output: Contribution to journal › Article › peer-review

851 Scopus citations

Integrative annotation of variants from 1092 humans: Application to cancer genomics

1000 Genomes Project Consortium, 4 Oct 2013, In: Science. 342, 6154, 1235587.

Research output: Contribution to journal › Article › peer-review

Open Access

293 Scopus citations

Learning natural selection from the site frequency spectrum

Ronen, R., Udpa, N., Halperin, E. & Bafna, V., 2013, In: Genetics. 195, 1, p. 181-193 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

82 Scopus citations

No evidence from genome-wide data of a khazar origin for the ashkenazi jews

Behar, D. M., Metspalu, M., Baran, Y., Kopelman, N. M., Yunusbayev, B., Gladstein, A., Tzur, S., Sahakyan, H., Bahmanimehr, A., Yepiskoposyan, L., Tambets, K., Khusnutdinova, E. K., Kushniarevich, A., Balanovsky, O., Balanovsky, E., Kovacevic, L., Marjanovic, D., Mihailov, E., Kouvatsi, A. & Triantaphyllidis, C. & 10 others, King, R. J., Semino, O., Torroni, A., Hammer, M. F., Metspalu, E., Skorecki, K., Rosset, S., Halperin, E., Villems, R. & Rosenberg, N. A., Dec 2013, In: Human Biology. 85, 6, p. 859-900 42 p.

Research output: Contribution to journal › Article › peer-review

64 Scopus citations

Probabilistic inference of viral quasispecies subject to recombination

Töpfer, A., Zagordi, O., Prabhakaran, S., Roth, V., Halperin, E. & Beerenwinkel, N., 1 Feb 2013, In: Journal of Computational Biology. 20, 2, p. 113-123 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

95 Scopus citations

Rare variant association testing under low-coverage sequencing

Navon, O., Sul, J. H., Han, B., Conde, L., Bracci, P. M., Riby, J., Skibola, C. F., Eskin, E. & Halperin, E., Jul 2013, In: Genetics. 194, 3, p. 769-779 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

2012

A model-based approach for analysis of spatial structure in genetic data

Yang, W. Y., Novembre, J., Eskin, E. & Halperin, E., Jun 2012, In: Nature Genetics. 44, 6, p. 725-731 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

115 Scopus citations

An integrated map of genetic variation from 1,092 human genomes

Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R. & Marth, G. T. & 371 others, McVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Li, Z., Liu, X., Lu, Y., Ma, X., Su, Z., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Zhou, Y., Gupta, N., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Fulton, R., Weinstock, G. M., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Auton, A., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Qin, N., Shao, H., Wang, B., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Garrison, E. P., Kural, D., Lee, W. P., Fung Leong, W., Ward, A. N., Wu, J., Zhang, M., Griffin, L., Hsieh, C. H., Mills, R. E., Shi, X., Von Grotthuss, M., Zhang, C., Daly, M. J., Depristo, M. A., Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Cheol Kim, K., Rausch, T., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R. S., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Keira Cheetham, R., Cox, T., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Ye, K., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Shriver, M. D., Bustamante, C. D., Byrnes, J. K., De La Vega, F. M., Gravel, S., Kenny, E. E., Kidd, J. M., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Bafna, V., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., James Kent, W., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Liu, X., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. P., Min Kang, H., Anderson, P., Angius, A., Bigham, A., Blackwell, T., Busonero, F., Cucca, F., Fuchsberger, C., Jones, C., Jun, G., Li, Y., Lyons, R., Maschio, A., Porcu, E., Reinier, F., Sanna, S., Schlessinger, D., Sidore, C., Tan, A., Kate Trost, M., Awadalla, P., Hodgkinson, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Ko, A., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Dooling, D., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Tyler-Smith, C., Albers, C. A., Ayub, Q., Chen, Y., Coffey, A. J., Colonna, V., Huang, N., Jostins, L., Li, H., Scally, A., Walter, K., Xue, Y., Zhang, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Fu, Y., Habegger, L., Harmanci, A. O., Jin, M., Khurana, E., Jasmine Mu, X., Sisu, C., Degenhardt, J., Stütz, A. M., Keira Cheetham, R., Church, D., Michaelson, J. J., Blackburne, B., Lindsay, S. J., Ning, Z., Frankish, A., Harrow, J., Mu, X. J., Fowler, G., Hale, W., Kalra, D., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Vaughan, B., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'Sullivan, C., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Gharani, N., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Reich, D., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Toji, L. H., Via, M., Wang, Y., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Ming, C. Z., Yang, G., Jia You, C., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Duncanson, A., Dunn, M., Guyer, M. S., Peterson, J. L. & Lacroute, P., 1 Nov 2012, In: Nature. 491, 7422, p. 56-65 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

6110 Scopus citations

Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia

Slager, S. L., Skibola, C. F., Di Bernardo, M. C., Conde, L., Broderick, P., McDonnell, S. K., Goldin, L. R., Croft, N., Holroyd, A., Harris, S., Riby, J., Serie, D. J., Kay, N. E., Call, T. G., Bracci, P. M., Halperin, E., Lanasa, M. C., Cunningham, J. M., Leis, J. F. & Morrison, V. A. & 14 others, Spector, L. G., Vachon, C. M., Shanafelt, T. D., Strom, S. S., Camp, N. J., Weinberg, J. B., Matutes, E., Caporaso, N. E., Wade, R., Dyer, M. J. S., Dearden, C., Cerhan, J. R., Catovsky, D. & Houlston, R. S., 26 Jul 2012, In: Blood. 120, 4, p. 843-846 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

65 Scopus citations

Fast and accurate inference of local ancestry in Latino populations

Baran, Y., Pasaniuc, B., Sankararaman, S., Torgerson, D. G., Gignoux, C., Eng, C., Rodriguez-Cintron, W., Chapela, R., Ford, J. G., Avila, P. C., Rodriguez-Santana, J., Burchard, E. G. & Halperin, E., May 2012, In: Bioinformatics. 28, 10, p. 1359-1367 9 p., bts144.

Research output: Contribution to journal › Article › peer-review

Open Access

174 Scopus citations

Haplotype reconstruction using perfect phylogeny and sequence data.

Efros, A. & Halperin, E., 2012, In: BMC Bioinformatics. 13 Suppl 6, p. S3 S3.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

Joint analysis of multiple metagenomic samples

Baran, Y. & Halperin, E., Feb 2012, In: PLoS Computational Biology. 8, 2, e1002373.

Research output: Contribution to journal › Article › peer-review

Open Access

17 Scopus citations

MGMR: leveraging RNA-Seq population data to optimize expression estimation.

Rozov, R., Halperin, E. & Shamir, R., 2012, In: BMC Bioinformatics. 13 Suppl 6, p. S2

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

PRRC2A and BCL2L11 gene variants influence risk of non-Hodgkin lymphoma: Results from the InterLymph consortium

Nieters, A., Conde, L., Slager, S. L., Brooks-Wilson, A., Morton, L., Skibola, D. R., Novak, A. J., Riby, J., Ansell, S. M., Halperin, E., Shanafelt, T. D., Agana, L., Wang, A. H., De Roos, A. J., Severson, R. K., Cozen, W., Spinelli, J., Butterbach, K., Becker, N. & De Sanjose, S. & 23 others, Benavente, Y., Cocco, P., Staines, A., Maynadié, M., Foretova, L., Boffetta, P., Brennan, P., Lan, Q., Zhang, Y., Zheng, T., Purdue, M., Armstrong, B., Kricker, A., Vajdic, C. M., Grulich, A., Smith, M. T., Bracci, P. M., Chanock, S. J., Hartge, P., Cerhan, J. R., Wang, S. S., Rothman, N. & Skibola, C. F., 29 Nov 2012, In: Blood. 120, 23, p. 4645-44648 40004 p.

Research output: Contribution to journal › Article › peer-review

Open Access

35 Scopus citations

2011

Abdominal aortic aneurysm is associated with a variant in low-density lipoprotein receptor-related protein 1

Bown, M. J., Jones, G. T., Harrison, S. C., Wright, B. J., Bumpstead, S., Baas, A. F., Gretarsdottir, S., Badger, S. A., Bradley, D. T., Burnand, K., Child, A. H., Clough, R. E., Cockerill, G., Hafez, H., Scott, D. J. A., Futers, S., Johnson, A., Sohrabi, S., Smith, A. & Thompson, M. M. & 461 others, van Bockxmeer, F. M., Waltham, M., Matthiasson, S. E., Thorleifsson, G., Thorsteinsdottir, U., Blankensteijn, J. D., Teijink, J. A. W., Wijmenga, C., de Graaf, J., Kiemeney, L. A., Assimes, T. L., McPherson, R., Folkersen, L., Franco-Cereceda, A., Palmen, J., Smith, A. J., Sylvius, N., Wild, J. B., Refstrup, M., Edkins, S., Gwilliam, R., Hunt, S. E., Potter, S., Lindholt, J. S., Frikke-Schmidt, R., Tybjærg-Hansen, A., Hughes, A. E., Golledge, J., Norman, P. E., van Rij, A., Powell, J. T., Eriksson, P., Stefansson, K., Thompson, J. R., Humphries, S. E., Sayers, R. D., Deloukas, P., Samani, N. J., Schunkert, H., König, I. R., Kathiresan, S., Reilly, M. P., Holm, H., Preuss, M., Stewart, A. F. R., Barbalic, M., Gieger, C., Absher, D., Aherrahrou, Z., Allayee, H., Altshuler, D., Anand, S. S., Andersen, K., Anderson, J. L., Ardissino, D., Ball, S. G., Balmforth, A. J., Barnes, T. A., Becker, D. M., Becker, L. C., Berger, K., Bis, J. C., Matthijs Boekholdt, S., Boerwinkle, E., Braund, P. S., Susan Burnett, M., Buysschaert, I., Carlquist, J. F., Chen, L., Cichon, S., Codd, V., Davies, R. W., Dedoussis, G., Dehghan, A., Demissie, S., Devaney, J. M., Diemert, P., Do, R., Doering, A., Eifert, S., El Mokhtari, N. E., Ellis, S. G., Elosua, R., Engert, J. C., Epstein, S. E., de Faire, U., Fischer, M., Folsom, A. R., Freyer, J., Gigante, B., Girelli, D., Gudnason, V., Gulcher, J. R., Halperin, E., Hammond, N., Hazen, S. L., Hofman, A., Horne, B. D., Illig, T., Iribarren, C., Wouter Jukema, J., Kaiser, M. A., Kaplan, L. M., Kastelein, J. J. P., Khaw, K. T., Knowles, J. W., Kolovou, G., Kong, A., Laaksonen, R., Lambrechts, D., Leander, K., Lettre, G., Li, M., Lieb, W., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meisinger, C., Meitinger, T., Melander, O., Angelica Merlini, P., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Münzel, T., Musunuru, K., Nahrstaedt, J., Nelson, C. P., Nöthen, M. M., Olivieri, O., Patel, R. S., Patterson, C. C., Peters, A., Peyvandi, F., Qu, L., Quyyumi, A. A., Rader, D. J., Rallidis, L. S., Rice, C., Rosendaal, F. R., Rubin, D., Salomaa, V., Lourdes Sampietro, M., Sandhu, M. S., Schadt, E., Schäfer, A., Schillert, A., Schreiber, S., Schrezenmeir, J., Schwartz, S. M., Siscovick, D. S., Sivananthan, M., Sivapalaratnam, S., Smith, T. B., Snoep, J. D., Soranzo, N., Spertus, J. A., Stark, K., Stirrups, K., Stoll, M., Wilson Tang, W. H., Tennstedt, S., Thorgeirsson, G., Tomaszewski, M., van Rij, A. M., Voight, B. F., Wareham, N. J., Wells, G. A., Wichmann, H. E., Wild, P. S., Willenborg, C., Witteman, J. C. M., Ye, S., Zeller, T., Ziegler, A., Cambien, F., Goodall, A. H., Adrienne Cupples, L., Quertermous, T., März, W., Hengstenberg, C., Blankenberg, S., Ouwehand, W. H., Hall, A. S., Roberts, R., O'Donnell, C. J., Erdmann, J., Newton-Cheh, C., Johnson, T., Gateva, V., Tobin, M. D., Bochud, M., Coin, L., Najjar, S. S., Hua Zhao, J., Heath, S. C., Eyheramendy, S., Papadakis, K., Scott, L. J., Zhang, F., Farrall, M., Tanaka, T., Wallace, C., Chambers, J. C., Nilsson, P., van der Harst, P., Polidoro, S., Grobbee, D. E., Onland-Moret, N. C., Bots, M. L., Wain, L. V., Elliott, K. S., Teumer, A., Luan, J., Lucas, G., Kuusisto, J., Burton, P. R., Hadley, D., McArdle, W. L., Brown, M., Dominiczak, A., Newhouse, S. J., Webster, J., Zeggini, E., Beckmann, J. S., Lim, N., Song, K., Vollenweider, P., Waeber, G., Waterworth, D. M., Yuan, X., Groop, L., Orho-Melander, M., Allione, A., Di Gregorio, A., Guarrera, S., Panico, S., Ricceri, F., Romanazzi, V., Sacerdote, C., Vineis, P., Barroso, I., Luben, R. N., Crawford, G. J., Jousilahti, P., Perola, M., Boehnke, M., Bonnycastle, L. L., Jackson, A. U., Mohlke, K. L., Stringham, H. M., Valle, T. T., Willer, C. J., Bergman, R. N., Morken, M. A., Döring, A., Org, E., Pfeufer, A., Marrugat, J., Subirana, I., Freimer, N. B., Hartikainen, A. L., McCarthy, M. I., O'Reilly, P. F., Peltonen, L., Pouta, A., de Jong, P. E., Snieder, H., van Gilst, W. H., Clarke, R., Goel, A., Hamsten, A., Peden, J. F., Seedorf, U., Syvänen, A. C., Tognoni, G., Lakatta, E. G., Sanna, S., Scheet, P., Schlessinger, D., Scuteri, A., Dörr, M., Ernst, F., Felix, S. B., Homuth, G., Lorbeer, R., Reffelmann, T., Rettig, R., Völker, U., Galan, P., Gut, I. G., Hercberg, S., Mark Lathrop, G., Zelenika, D., Williams, F. M., Zhai, G., Laakso, M., Forouhi, N. G., Völzke, H., Uiterwaal, C. S., van der Schouw, Y. T., Numans, M. E., Matullo, G., Navis, G., Berglund, G., Bingham, S. A., Kooner, J. S., Connell, J. M., Bandinelli, S., Ferrucci, L., Watkins, H., Spector, T. D., Tuomilehto, J., Strachan, D. P., Laan, M., Meneton, P., Uda, M., Jarvelin, M. R., Loos, R. J. F., Elliott, P., Abecasis, G. R., Caulfield, M., Munroe, P. B., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Huth, C., Aulchenko, Y. S., McCulloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Raychaudhuri, S., McCarroll, S. A., Langenberg, C., Hofmann, O. M., Dupuis, J., Qi, L., Segrè, A. V., van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Bengtsson Boström, K., Bravenboer, B., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, A. L., Elliott, A. L., Erdos, M. R., Fox, C. S., Franklin, C. S., Ganser, M., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Isomaa, B., Johnson, P. R. V., Jørgensen, T., Kao, W. H. L., Klopp, N., Kraft, P., Lauritzen, T., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Midthjell, K., Narisu, N., Owen, K. R., Payne, F., Perry, J. R. B., Petersen, A. K., Platou, C., Proença, C., Prokopenko, I., Rathmann, W., William Rayner, N., Robertson, N. R., Rocheleau, G., Roden, M., Sampson, M. J., Saxena, R., Shields, B. M., Shrader, P., Sigurdsson, G., Sparsø, T., Strassburger, K., Sun, Q., Swift, A. J., Thorand, B., Tichet, J., Tuomi, T., van Dam, R. M., van Haeften, T. W., van Herpt, T., van Vliet-Ostaptchouk, J. V., Bragi Walters, G., Weedon, M. N., Cauchi, S., Gloyn, A. L., Gyllensten, U., Hansen, T., Hide, W. A., Hitman, G. A., Hunter, D. J., Hveem, K., Morris, A. D., Palmer, C. N. A., Pramstaller, P. P., Rudan, I., Sijbrands, E., Stein, L. D., Uitterlinden, A., Walker, M., Watanabe, R. M., Boehm, B. O., Campbell, H., Daly, M. J., Hattersley, A. T., Hu, F. B., Meigs, J. B., Pankow, J. S., Pedersen, O., Florez, J. C., Frayling, T. M., Sladek, R., Wilson, J. F., Froguel, P., van Duijn, C. M., Blair, R. D., Hill, A. A., Gerry Hill, B., Lewis, D. R., McNoe, L. A., Merriman, T. R., Naik, D. K., Vicky Phillips, L., Thomson, I. A., Topless, R., Vasudevan, T. M. & Yu, G., 11 Nov 2011, In: American Journal of Human Genetics. 89, 5, p. 619-627 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

162 Scopus citations

Accurate estimation of expression levels of homologous genes in RNA-seq experiments

Paşaniuc, B., Zaitlen, N. & Halperin, E., 1 Mar 2011, In: Journal of Computational Biology. 18, 3, p. 459-468 10 p.

Research output: Contribution to journal › Article › peer-review

24 Scopus citations

A search for overlapping genetic susceptibility loci between non-Hodgkin lymphoma and autoimmune diseases

Conde, L., Bracci, P. M., Halperin, E. & Skibola, C. F., Jul 2011, In: Genomics. 98, 1, p. 9-14 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

17 Scopus citations

Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes

Strawbridge, R. J., Dupuis, J., Prokopenko, I., Barker, A., Ahlqvist, E., Rybin, D., Petrie, J. R., Travers, M. E., Bouatia-Naji, N., Dimas, A. S., Nica, A. C., Wheeler, E., Chen, H., Voight, B. F., Taneera, J., Kanoni, S., Peden, J. F., Turrini, F., Gustafsson, S. & Zabena, C. & 670 others, Almgren, P., Barker, D. J. P., Barnes, D., Dennison, E. M., Eriksson, J. G., Eriksson, P., Eury, E., Folkersen, L., Fox, C. S., Frayling, T. M., Goel, A., Gu, H. F., Horikoshi, M., Isomaa, B., Jackson, A. U., Jameson, K. A., Kajantie, E., Kerr-Conte, J., Kuulasmaa, T., Kuusisto, J., Loos, R. J. F., Luan, J., Makrilakis, K., Manning, A. K., Martínez-Larrad, M. T., Narisu, N., Mannila, M. N., Öhrvik, J., Osmond, C., Pascoe, L., Payne, F., Sayer, A. A., Sennblad, B., Silveira, A., Stančcáková, A., Stirrups, K., Swift, A. J., Syvänen, A. C., Tuomi, T., Van't Hooft, F. M., Walker, M., Weedon, M. N., Xie, W., Zethelius, B., Scott, L. J., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Zeggini, E., Huth, C., Aulchenko, Y. S., Thorleifsson, G., Mcculloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Willer, C. J., Raychaudhuri, S., McCarroll, S. A., Hofmann, O. M., Qi, L., Segre, A. V., Van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Boerwinkle, E., Bonnycastle, L. L., Bostrom, K. B., Bravenboer, B., Bumpstead, S., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, K. S., Elliott, A. L., Erdos, M. R., Franklin, C. S., Ganser, M., Gieger, C., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Johnson, P. R. V., Jorgensen, T., Kao, W. H. L., Klopp, N., Kong, A., Kraft, P., Lauritzen, T., Li, M., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Meitinger, T., Midthjell, K., Morken, M. A., Nilsson, P., Owen, K. R., Perry, J. R. B., Petersen, A. K., Platou, C., Proenca, C., Rathmann, W., Rayner, N. W., Robertson, N. R., Rocheleau, G., Roden, M., Sampson, M. J., Saxena, R., Shields, B. M., Shrader, P., Sigurdsson, G., Sparso, T., Strassburger, K., Stringham, H. M., Sun, Q., Thorand, B., Tichet, J., Van Dam, R. M., Van Haeften, T. W., Van Herpt, T., Van Vliet-Ostaptchouk, J. V., Walters, G. B., Wijmenga, C., Witteman, J. C. M., Bergman, R. N., Cauchi, S., Collins, F. S., Gloyn, A. L., Gyllensten, U., Hansen, T., Hide, W. A., Hitman, G. A., Hofman, A., Hunter, D. J., Hveem, K., Laakso, M., Mohlke, K. L., Morris, A. D., Palmer, C. N. A., Pramstaller, P. P., Rudan, I., Sijbrands, E., Stein, L. D., Tuomilehto, J., Uitterlinden, A. G., Wareham, N. J., Watanabe, R. M., Abecasis, G. R., Boehm, B. O., Campbell, H., Daly, M. J., Hattersley, A. T., Hu, F. B., Meigs, J. B., Pankow, J. S., Pedersen, O., Wichmann, H. E., Barroso, I., Groop, L., Sladek, R., Thorsteinsdottir, U., Wilson, J. F., Illig, T., Froguel, P., Van Duijn, C. M., Stefansson, K., Altshuler, D., Boehnke, M., McCarthy, M. I., Speliotes, E. K., Berndt, S. I., Monda, K. L., Allen, H. L., Magi, R., Randall, J. C., Vedantam, S., Winkler, T. W., Workalemahu, T., Heid, I. M., Wood, A. R., Weyant, R. J., Estrada, K., Liang, L., Nemesh, J., Park, J. H., Kilpelainen, T. O., Yang, J., Esko, T., Feitosa, M. F., Kutalik, Z., Mangino, M., Scherag, A., Smith, A. V., Zhao, J. H., Aben, K. K., Absher, D. M., Dixon, A. L., Fisher, E., Glazer, N. L., Goddard, M. E., Heard-Costa, N. L., Hoesel, V., Hottenga, J. J., Johansson, A., Johnson, T., Ketkar, S., Lamina, C., Li, S., Moffatt, M. F., Myers, R. H., Peters, M. J., Preuss, M., Ripatti, S., Rivadeneira, F., Sandholt, C., Timpson, N. J., Tyrer, J. P., Van Wingerden, S., White, C. C., Wiklund, F., Barlassina, C., Chasman, D. I., Cooper, M. N., Jansson, J. O., Lawrence, R. W., Pellikka, N., Shi, J., Thiering, E., Alavere, H., Alibrandi, M. T. S., Arnold, A. M., Aspelund, T., Atwood, L. D., Balmforth, A. J., Ben-Shlomo, Y., Bergmann, S., Biebermann, H., Blakemore, A. I. F., Boes, T., Bornstein, S. R., Brown, M. J., Buchanan, T. A., Busonero, F., Cappuccio, F. P., Cavalcanti-Proenca, C., Chen, Y. D. I., Chen, C. M., Clarke, R., Coin, L., Connell, J., Day, I. N. M., Den Heijer, M., Duan, J., Ebrahim, S., Elliott, P., Elosua, R., Eiriksdottir, G., Facheris, M. F., Felix, S. B., Fischer-Posovszky, P., Folsom, A. R., Friedrich, N., Freimer, N. B., Fu, M., Gaget, S., Gejman, P. V., Geus, E. J. C., Gjesing, A. P., Goyette, P., Grasler, J., Greenawalt, D. M., Gudnason, V., Hartikainen, A. L., Hall, A. S., Havulinna, A. S., Hayward, C., Heath, A. C., Hengstenberg, C., Hicks, A. A., Hinney, A., Homuth, G., Hui, J., Igl, W., Iribarren, C., Jacobs, K. B., Jarick, I., Jewell, E., John, U., Jousilahti, P., Jula, A., Kaakinen, M., Kaplan, L. M., Kathiresan, S., Kettunen, J., Kinnunen, L., Knowles, J. W., Kolcic, I., König, I. R., Koskinen, S., Kovacs, P., Kvaloy, K., Laitinen, J., Lantieri, O., Lanzani, C., Launer, L. J., Lecoeur, C., Lehtimaki, T., Lettre, G., Liu, J., Lokki, M. L., Lorentzon, M., Luben, R. N., Ludwig, B., Manunta, P., Marek, D., Martin, N. G., McArdle, W. L., McCarthy, A., McKnight, B., Melander, O., Meyre, D., Montgomery, G. W., Mulic, R., Ngwa, J. S., Nelis, M., Neville, M. J., Nyholt, D. R., O'Donnell, C. J., O'Rahilly, S., Ong, K. K., Oostra, B., Pare, G., Parker, A. N., Perola, M., Pichler, I., Pietilainen, K. H., Platou, C. G. P., Polasek, O., Pouta, A., Rafelt, S., Raitakari, O., Rayner, N. W., Ridderstrale, M., Rief, W., Ruokonen, A., Rzehak, P., Salomaa, V., Sanders, A. R., Sandhu, M. S., Sanna, S., Saramies, J., Savolainen, M. J., Scherag, S., Schipf, S., Schreiber, S., Schunkert, H., Silander, K., Sinisalo, J., Siscovick, D. S., Smit, J. H., Soranzo, N., Sovio, U., Stephens, J., Surakka, I., Tammesoo, M. L., Tardif, J. C., Teder-Laving, M., Teslovich, T. M., Thompson, J. R., Thomson, B., Tonjes, A., Van Meurs, J. B. J., Van Ommen, G. J., Vatin, V., Viikari, J., Visvikis-Siest, S., Vitart, V., Vogel, C. I. G., Waite, L. L., Wallaschofski, H., Widen, E., Wiegand, S., Wild, S. H., Willemsen, G., Witte, D. R., Xu, J., Zhang, Q., Zgaga, L., Ziegler, A., Zitting, P., Beilby, J. P., Farooqi, I. S., Hebebrand, J., Huikuri, H. V., James, A. L., Kahonen, M., Levinson, D. F., Macciardi, F., Nieminen, M. S., Ohlsson, C., Palmer, L. J., Ridker, P. M., Stumvoll, M., Beckmann, J. S., Boeing, H., Boomsma, D. I., Caulfield, M. J., Chanock, S. J., Cupples, L. A., Smith, G. D., Erdmann, J., Gronberg, H., Hall, P., Harris, T. B., Hayes, R. B., Heinrich, J., Jarvelin, M. R., Kaprio, J., Karpe, F., Khaw, K. T., Kiemeney, L. A., Krude, H., Lawlor, D. A., Metspalu, A., Munroe, P. B., Ouwehand, W. H., Penninx, B. W., Peters, A., Quertermous, T., Reinehr, T., Rissanen, A., Samani, N. J., Schwarz, P. E. H., Shuldiner, A. R., Spector, T. D., Uda, M., Valle, T. T., Wabitsch, M., Waeber, G., Watkins, H., Wright, A. F., Zillikens, M. C., Chatterjee, N., Purcell, S., Schadt, E. E., Visscher, P. M., Assimes, T. L., Borecki, I. B., Deloukas, P., Haritunians, T., Kaplan, R. C., O'Connell, J. R., Peltonen, L., Schlessinger, D., Strachan, D. P., North, K. E., Hirschhorn, J. N., Ingelsson, E., Parts, L., Glass, D., Nisbet, J., Barrett, A., Sekowska, M., Potter, S., Grundberg, E., Small, K., Hedman, A. K., Bataille, V., Bell, J. T., Surdulescu, G., Ingle, C., Nestle, F. O., Di Meglio, P., Min, J. L., Wilk, A., Hammond, C. J., Yang, T. P., Montgomery, S. B., Zondervan, K. T., Durbin, R., Ahmadi, K., Dermitzakis, E. T., Reilly, M. P., Holm, H., Stewart, A. F. R., Barbalic, M., Aherrahrou, Z., Allayee, H., Anand, S. S., Andersen, K., Anderson, J. L., Ardissino, D., Ball, S. G., Barnes, T. A., Becker, D. M., Becker, L. C., Berger, K., Bis, J. C., Boekholdt, S. M., Braund, P. S., Burnett, M. S., Buysschaert, I., Carlquist, J. F., Chen, L., Codd, V., Davies, R. W., Cichon, S., Dedoussis, G. V., Demissie, S., Dehghan, A., Devaney, J. M., Diemert, P., Do, R., Doering, A., Eifert, S., El Mokhtari, N. E., Ellis, S. G., Engert, J. C., Epstein, S. E., De Faire, U., Fischer, M., Freyer, J., Gigante, B., Girelli, D., Gretarsdottir, S., Gulcher, J. R., Halperin, E., Hammond, N., Hazen, S. L., Horne, B. D., Jones, G. T., Jukema, J. W., Kaiser, M. A., Kastelein, J. J. P., Kolovou, G., Laaksonen, R., Lambrechts, D., Leander, K., Li, M., Lieb, W., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meisinger, C., Merlini, P. A., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Münzel, T., Musunuru, K., Nahrstaedt, J., Nelson, C. P., Nöthen, M. M., Olivieri, O., Patel, R. S., Patterson, C. C., Peyvandi, F., Qu, L., Quyyumi, A. A., Rader, D. J., Rallidis, L. S., Rice, C., Rosendaal, F. R., Rubin, D., Sampietro, M. L., Sandhu, M. S., Schäfer, A., Schillert, A., Schrezenmeir, J., Schwartz, S. M., Sivananthan, M., Sivapalaratnam, S., Smith, T. B., Snoep, J. D., Spertus, J. A., Stark, K., Stoll, M., Wilson Tang, W. H., Tennstedt, S., Thorgeirsson, G., Tomaszewski, M., Van Rij, A. M., Wells, G. A., Wild, P. S., Willenborg, C., Wright, B. J., Ye, S., Zeller, T., Cambien, F., Goodall, A. H., Marz, W., Blankenberg, S., Roberts, R., McPherson, R., Hopewell, J. C., Parish, S., Offer, A., Bowman, L., Sleight, P., Armitage, J., Peto, R., Collins, R., Chambers, J. C., Ahmed, N., Donnelly, P., Kooner, A. S., Scott, J., Sehmi, J., Zhang, W., Kooner, J., Sabater-Lleal, M., Mälarstig, A., Hellénius, M. L., Olsson, G., Rust, S., Assmann, G., Seedorf, U., Barlera, S., Tognoni, G., Franzosi, M. G., Linksted, P., Ongen, H., Kyriakou, T., Green, F., Farrall, M., Saleheen, D., Rasheed, A., Zaidi, M., Shah, N., Samuel, M., Mallick, N., Azhar, M., Zaman, K., Samad, A., Ishaq, M., Gardezi, A., Memon, F. U. R., Frossard, P., Danesh, J., Östenson, C. G., Lind, L., Cooper, C. C., Serrano-Ríos, M., Ferrannini, E., Forsen, T. J., Pattou, F., Langenberg, C., Hamsten, A. & Florez, J. C., 1 Oct 2011, In: Diabetes. 60, 10, p. 2624-2634 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

298 Scopus citations

Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure

LifeLines Cohort Study, EchoGen consortium, AortaGen Consortium, CHARGE Consortium Heart Failure Working Group, KidneyGen consortium & CKDGen consortium; Cardiogenics consortium; CardioGram, 1 Oct 2011, In: Nature Genetics. 43, 10, p. 1005-1012 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

365 Scopus citations

Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota

Kovacs, A., Ben-Jacob, N., Tayem, H., Halperin, E., Iraqi, F. A. & Gophna, U., Feb 2011, In: Microbial Ecology. 61, 2, p. 423-428 6 p.

Research output: Contribution to journal › Article › peer-review

183 Scopus citations

Genotyping common and rare variation using overlapping pool sequencing

He, D., Zaitlen, N., Pasaniuc, B., Eskin, E. & Halperin, E., 28 Jul 2011, In: BMC Bioinformatics. 12, SUPPL.6, S2.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

Inhibition of activated pericentromeric SINE/Alu repeat transcription in senescent human adult stem cells reinstates self-renewal

Wang, J., Geesman, G. J., Hostikka, S. L., Atallah, M., Blackwell, B., Lee, E., Cook, P. J., Pasaniuc, B., Shariat, G., Halperin, E., Dobke, M., Rosenfeld, M. G., Jordan, I. K. & Lunyak, V. V., 1 Sep 2011, In: Cell Cycle. 10, 17, p. 3016-3030 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

92 Scopus citations

Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease

Schunkert, H., König, I. R., Kathiresan, S., Reilly, M. P., Assimes, T. L., Holm, H., Preuss, M., Stewart, A. F. R., Barbalic, M., Gieger, C., Absher, D., Aherrahrou, Z., Allayee, H., Altshuler, D., Anand, S. S., Andersen, K., Anderson, J. L., Ardissino, D., Ball, S. G. & Balmforth, A. J. & 147 others, Barnes, T. A., Becker, D. M., Becker, L. C., Berger, K., Bis, J. C., Boekholdt, S. M., Boerwinkle, E., Braund, P. S., Brown, M. J., Burnett, M. S., Buysschaert, I., Carlquist, J. F., Chen, L., Cichon, S., Codd, V., Davies, R. W., Dedoussis, G., Dehghan, A., Demissie, S., Devaney, J. M., Diemert, P., Do, R., Doering, A., Eifert, S., Mokhtari, N. E. E., Ellis, S. G., Elosua, R., Engert, J. C., Epstein, S. E., De Faire, U., Fischer, M., Folsom, A. R., Freyer, J., Gigante, B., Girelli, D., Gretarsdottir, S., Gudnason, V., Gulcher, J. R., Halperin, E., Hammond, N., Hazen, S. L., Hofman, A., Horne, B. D., Illig, T., Iribarren, C., Jones, G. T., Jukema, J. W., Kaiser, M. A., Kaplan, L. M., Kastelein, J. J. P., Khaw, K. T., Knowles, J. W., Kolovou, G., Kong, A., Laaksonen, R., Lambrechts, D., Leander, K., Lettre, G., Li, M., Lieb, W., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meisinger, C., Meitinger, T., Melander, O., Merlini, P. A., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Münzel, T., Musunuru, K., Nahrstaedt, J., Nelson, C. P., Nöthen, M. M., Olivieri, O., Patel, R. S., Patterson, C. C., Peters, A., Peyvandi, F., Qu, L., Quyyumi, A. A., Rader, D. J., Rallidis, L. S., Rice, C., Rosendaal, F. R., Rubin, D., Salomaa, V., Sampietro, M. L., Sandhu, M. S., Schadt, E., Scḧsignfer, A., Schillert, A., Schreiber, S., Schrezenmeir, J., Schwartz, S. M., Siscovick, D. S., Sivananthan, M., Sivapalaratnam, S., Smith, A., Smith, T. B., Snoep, J. D., Soranzo, N., Spertus, J. A., Stark, K., Stirrups, K., Stoll, M., Tang, W. H. W., Tennstedt, S., Thorgeirsson, G., Thorleifsson, G., Tomaszewski, M., Uitterlinden, A. G., Van Rij, A. M., Voight, B. F., Wareham, N. J., Wells, G. A., Wichmann, H. E., Wild, P. S., Willenborg, C., Witteman, J. C. M., Wright, B. J., Ye, S., Zeller, T., Ziegler, A., Cambien, F., Goodall, A. H., Cupples, L. A., Quertermous, T., Mäsignrz, W., Hengstenberg, C., Blankenberg, S., Ouwehand, W. H., Hall, A. S., Deloukas, P., Thompson, J. R., Stefansson, K., Roberts, R., Thorsteinsdottir, U., O'Donnell, C. J., McPherson, R., Erdmann, J. & Samani, N. J., Feb 2011, In: Nature Genetics. 43, 4, p. 333-340 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1537 Scopus citations

Large-scale gene-centric analysis identifies novel variants for coronary artery disease

Butterworth, A. S., Braund, P. S., Farrall, M., Hardwick, R. J., Saleheen, D., Peden, J. F., Soranzo, N., Chambers, J. C., Sivapalaratnam, S., Kleber, M. E., Keating, B., Qasim, A., Klopp, N., Erdmann, J., Assimes, T. L., Ball, S. G., Balmforth, A. J., Barnes, T. A., Basart, H. & Baumert, J. & 327 others, Bezzina, C. R., Boerwinkle, E., Boehm, B. O., Brocheton, J., Bugert, P., Cambien, F., Clarke, R., Codd, V., Collins, R., Couper, D., Adrienne Cupples, L., de Jong, J. S., Diemert, P., Ejebe, K., Elbers, C. C., Elliott, P., Fornage, M., Franzosi, M. G., Frossard, P., Garner, S., Goel, A., Goodall, A. H., Hengstenberg, C., Hunt, S. E., Kastelein, J. J. P., Klungel, O. H., Klüterr, H., Koch, K., König, I. R., Kooner, A. S., Laaksonen, R., Lathrop, M., Li, M., Liu, K., McPherson, R., Musameh, M. D., Musani, S., Nelson, C. P., O'Donnell, C. J., Ongen, H., Papanicolaou, G., Peters, A., Peters, B. J. M., Potter, S., Psaty, B. M., Qu, L., Rader, D. J., Rasheed, A., Rice, C., Scott, J., Seedorf, U., Sehmi, J. S., Sotoodehnia, N., Stark, K., Stephens, J., van der Schoot, C. E., van der Schouw, Y. T., Thorsteinsdottir, U., Tomaszewski, M., van der Harst, P., Vasan, R. S., Wilde, A. A. M., Willenborg, C., Winkelmann, B. R., Zaidi, M., Zhang, W., Ziegler, A., de Bakker, P. I. W., Koenig, W., März, W., Trip, M. D., Reilly, M. P., Kathiresan, S., Schunkert, H., Hamsten, A., Hall, A. S., Kooner, J. S., Thompson, S. G., Thompson, J. R., Deloukas, P., Ouwehand, W. H., Watkins, H., Danesh, J., Samani, N. J., Rafelt, S., Bruinsma, N., Dekker, L. R., Henriques, J. P., de Winter, R. J., Alings, M., Allaart, C. F., Gorgels, A. P., Verheugt, F. W., Mueller, M., Meisinger, C., DerOhannessian, S., Mehta, N. N., Ferguson, J., Hakonarson, H., Matthai, W., Wilensky, R., Hopewell, J. C., Parish, S., Linksted, P., Notman, J., Gonzalez, H., Young, A., Ostley, T., Munday, A., Goodwin, N., Verdon, V., Shah, S., Cobb, L., Edwards, C., Mathews, C., Gunter, R., Benham, J., Davies, C., Cobb, M., Crowther, J., Richards, A., Silver, M., Tochlin, S., Mozley, S., Clark, S., Radley, M., Kourellias, K., Olsson, P., Barlera, S., Tognoni, G., Rust, S., Assmann, G., Heath, S., Zelenika, D., Gut, I., Green, F., Aly, A., Anner, K., Björklund, K., Blomgren, G., Cederschiöld, B., Danell-Toverud, K., Eriksson, P., Grundstedt, U., Heinonen, M., Hellénius, M. L., van't Hooft, F., Husman, K., Lagercrantz, J., Larsson, A., Larsson, M., Mossfeldt, M., Mälarstig, A., Olsson, G., Sabater-Lleal, M., Sennblad, B., Silveira, A., Strawbridge, R., Söderholm, B., Öhrvik, J., Shah Zaman, K., Hayat Mallick, N., Azhar, M., Samad, A., Ishaq, M., Shah, N., Samuel, M., Holm, H., Preuss, M., Stewart, A. F. R., Barbalic, M., Gieger, C., Absher, D., Aherrahrou, Z., Allayee, H., Altshuler, D., Anand, S., Andersen, K., Anderson, J. L., Ardissino, D., Becker, L. C., Becker, D. M., Berger, K., Bis, J. C., Matthijs Boekholdt, S., Brown, M. J., Susan Burnett, M., Buysschaert, I., Carlquist, J. F., Chen, L., Davies, R. W., Dedoussis, G., Dehghan, A., Demissie, S., Devaney, J., Do, R., Doering, A., El Mokhtari, N. E., Ellis, S. G., Elosua, R., Engert, J. C., Epstein, S., de Faire, U., Fischer, M., Folsom, A. R., Freyer, J., Gigante, B., Girelli, D., Gretarsdottir, S., Gudnason, V., Gulcher, J. R., Tennstedt, S., Halperin, E., Hammond, N., Hazen, S. L., Hofman, A., Horne, B. D., Illig, T., Iribarren, C., Jones, G. T., Wouter Jukema, J., Kaiser, M. A., Kaplan, L. M., Khaw, K. T., Knowles, J. W., Kolovou, G., Kong, A., Lambrechts, D., Leander, K., Lieb, W., Lettre, G., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meitinger, T., Melander, O., Angelica Merlini, P., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Musunuru, K., Nahrstaedt, J., Nöthen, M. M., Olivieri, O., Peyvandi, F., Patel, R. S., Patterson, C. C., Quyyumi, A. A., Rallidis, L. S., Roosendaal, F. R., Rubin, D., Salomaa, V., Lourdes Sampietro, M., Sandhu, M. S., Schadt, E., Schäfer, A., Schillert, A., Schreiber, S., Schrezenmeir, J., Schwartz, S. M., Siscovick, D. S., Sivananthan, M., Smith, A. V., Smith, T. B., Snoep, J. D., Spertus, J. A., Stefansson, K., Stirrups, K., Stoll, M., Wilson Tang, W. H., Thorgeirsson, G., Thorleifsson, G., Uitterlinden, A. G., van Rij, A. M., Voight, B. F., Wareham, N. J., Wells, G. A., Wichmann, H. E., Witteman, J. C. M., Wright, B. J., Ye, S., Quertermous, T., Blankenberg, S., Roberts, R., Onland-Moret, N. C., van Setten, J., Monique Verschuren, W. M., Boer, J. M. A., Wijmenga, C., Hofker, M. H., Maitland-van der Zee, A. H., de Boer, A., Grobbee, D. E., Attwood, T., Belz, S., Cooper, J., Crisp-Hihn, A., Foad, N., Gracey, J., Gray, E., Gwilliams, R., Heimerl, S., Jolley, J., Krishnan, U., Lloyd-Jones, H., Lugauer, I., Lundmark, P., Moore, J. S., Muir, D., Murray, E., Neudert, J., Niblett, D., O'Leary, K., Pollard, H., Rankin, A., Rice, C. M., Sager, H., Sambrook, J., Schmitz, G., Scholz, M., Schroeder, L., Syvannen, A. C. & Wallace, C., 1 Sep 2011, In: PLoS Genetics. 7, 9, e1002260.

Research output: Contribution to journal › Article › peer-review

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196 Scopus citations

Eran Halperin

Research output

Search results