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Eran Halperin

Professor

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1998 …2024

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  • 2018

    Tensor composition analysis detects cell-type specific associations in epigenetic studies

    Rahmani, E., Schweiger, R., Rosset, S., Sankararaman, S. & Halperin, E., 2018, Research in Computational Molecular Biology - 22nd Annual International Conference, RECOMB 2018, Proceedings. Raphael, B. J. (ed.). Springer Verlag, p. 274-275 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10812 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2017

    A bayesian framework for estimating cell type composition from DNA methylation without the need for methylation reference

    Rahmani, E., Schweiger, R., Shenhav, L., Eskin, E. & Halperin, E., 2017, Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Proceedings. Sahinalp, S. C. (ed.). Springer Verlag, p. 207-223 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10229 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    3 Scopus citations

  • Using stochastic approximation techniques to efficiently construct confidence intervals for heritability

    Schweiger, R., Fisher, E., Rahmani, E., Shenhav, L., Rosset, S. & Halperin, E., 2017, Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Proceedings. Sahinalp, S. C. (ed.). Springer Verlag, p. 241-256 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10229 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations
  • 2015

    Multiple-ancestor localization for recently admixed individuals

    Margalit, Y., Baran, Y. & Halperin, E., 2015, Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Verlag, p. 121-135 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9289).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2013

    eALPS: Estimating abundance levels in pooled sequencing using available genotyping data

    Eskin, I., Hormozdiari, F., Conde, L., Riby, J., Skibola, C., Eskin, E. & Halperin, E., 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 32-44 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Learning natural selection from the site frequency spectrum

    Ronen, R., Udpa, N., Halperin, E. & Bafna, V., 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 230-233 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2012

    CNVeM: Copy number variation detection using uncertainty of read mapping

    Wang, Z., Hormozdiari, F., Yang, W. Y., Halperin, E. & Eskin, E., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 326-340 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Probabilistic inference of viral quasispecies subject to recombination

    Zagordi, O., Töpfer, A., Prabhakaran, S., Roth, V., Halperin, E. & Beerenwinkel, N., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 342-354 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    13 Scopus citations
  • 2011

    Pedigree Reconstruction Using Identity by Descent

    Kirkpatrick, B., Li, S. C., Karp, R. M. & Halperin, E., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 136-152 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations
  • 2010

    Accurate estimation of expression levels of homologous genes in RNA-seq experiments

    Paşaniuc, B., Zaitlen, N. & Halperin, E., 2010, Research in Computational Molecular Biology - 14th Annual International Conference, RECOMB 2010, Proceedings. p. 397-409 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6044 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    15 Scopus citations
  • 2009

    Haplotype inference in complex pedigrees

    Kirkpatrick, B., Rosa, J., Halperin, E. & Karp, R. M., 2009, Research in Computational Molecular Biology - 13th Annual International Conference, RECOMB 2009, Proceedings. Springer Verlag, p. 108-120 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5541 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2008

    On the inference of ancestries in admixed populations

    Sankararaman, S., Kimmel, G., Halperin, E. & Jordan, M. I., 2008, Research in Computational Molecular Biology - 12th Annual International Conference, RECOMB 2008, Proceedings. p. 424-433 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4955 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2007

    An efficient and accurate graph-based approach to detect population substructure

    Sridhar, S., Rao, S. & Halperin, E., 2007, Research in Computational Molecular Biology - 11th Annual International Conference, RECOMB 2007, Proceedings. Springer Verlag, p. 503-517 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4453 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • A rigorous analysis of population stratification with limited data

    Chaudhuri, K., Halperin, E., Rao, S. & Zhou, S., 2007, Proceedings of the 18th Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2007. Association for Computing Machinery, p. 1046-1055 10 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms; vol. 07-09-January-2007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations
  • 2006

    Fixed parameter tractability of binary near-perfect phylogenetic tree reconstruction

    Blelloch, G. E., Dhamdhere, K., Halperin, E., Ravi, R., Schwartz, R. & Sridhar, S., 2006, Automata, Languages and Programming - 33rd International Colloquium, ICALP 2006, Proceedings. Springer Verlag, p. 667-678 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4051 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    18 Scopus citations

  • Simple reconstruction of binary near-perfect phylogenetic trees

    Sridhar, S., Dhamdhere, K., Blelloch, G. E., Halperin, E., Ravi, R. & Schwartz, R., 2006, Computational Science - ICCS 2006: 6th International Conference, Proceedings. Springer Verlag, p. 799-806 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3992 LNCS - II).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    4 Scopus citations

  • SNP and Haplotype analysis - Algorithms and applications

    Halperin, E., 2006, Combinatorial Pattern Matching - 17th Annual Symposium, CPM 2006, Proceedings. Springer Verlag, p. 11 1 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4009 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2004

    Large scale recovery of haplotypes from genotype data using imperfect phylogeny

    Halperin, E., 2004, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Istrail, S., Waterman, M. & Clark, A. (eds.). Springer Verlag, p. 137 1 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2983).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2002

    Improved approximation algorithms for the partial vertex cover problem

    Halperin, E. & Srinivasan, A., 2002, Approximation Algorithms for Combinatorial Optimization - 5th International Workshop, APPROX 2002, Proceedings. Jansen, K., Leonardi, S. & Vazirani, V. (eds.). Springer Verlag, p. 161-174 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2462).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    29 Scopus citations

  • MAX CUT in cubic graphs

    Halperin, E., Livnat, D. & Zwick, U., 2002, Proceedings of the 13th Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2002. Association for Computing Machinery, p. 506-513 8 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms; vol. 06-08-January-2002).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Reachability and distance queries via 2-hop labels

    Cohen, E., Halperin, E., Kaplan, H. & Zwick, U., 2002, Proceedings of the 13th Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2002. Association for Computing Machinery, p. 937-946 10 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms; vol. 06-08-January-2002).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    178 Scopus citations
  • 2001

    A unified framework for obtaining improved approximation algorithms for maximum graph bisection problems

    Halperin, E. & Zwick, U., 2001, Integer Programming and Combinatorial Optimization - 8th International IPCO Conference, Proceedings. Aardal, K. & Gerards, B. (eds.). Springer Verlag, p. 210-225 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2081).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    15 Scopus citations

  • Coloring k-colorable graphs using smaller palettes

    Halperin, E., Nathaniel, R. & Zwick, U., 2001, Proceedings of the 12th Annual ACM-SIAM Symposium on Discrete Algorithms. p. 319-326 8 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    14 Scopus citations

  • Performance aspects of distributed caches using TTL-based consistency

    Cohen, E., Halperin, E. & Kaplan, H., 2001, Automata, Languages and Programming - 28th International Colloquium, ICALP 2001, Proceedings. Orejas, F., Spirakis, P. G. & van Leeuwen, J. (eds.). Springer Verlag, p. 744-756 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2076 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations
  • 1999

    Approximation algorithms for MAX 4-SAT and rounding procedures for semidefinite programs

    Halperin, E. & Zwick, U., 1999, Integer Programming and Combinatorial Optimization - 7th International IPCO Conference, 1999, Proceedings. Cornuejols, G., Burkard, R. E. & Woeginger, G. J. (eds.). Springer Verlag, p. 202-217 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1610).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations