Eran Halperin

2012

An integrated map of genetic variation from 1,092 human genomes

Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R. & Marth, G. T. & 371 others, McVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Li, Z., Liu, X., Lu, Y., Ma, X., Su, Z., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Zhou, Y., Gupta, N., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Fulton, R., Weinstock, G. M., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Auton, A., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Qin, N., Shao, H., Wang, B., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Garrison, E. P., Kural, D., Lee, W. P., Fung Leong, W., Ward, A. N., Wu, J., Zhang, M., Griffin, L., Hsieh, C. H., Mills, R. E., Shi, X., Von Grotthuss, M., Zhang, C., Daly, M. J., Depristo, M. A., Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Cheol Kim, K., Rausch, T., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R. S., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Keira Cheetham, R., Cox, T., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Ye, K., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Shriver, M. D., Bustamante, C. D., Byrnes, J. K., De La Vega, F. M., Gravel, S., Kenny, E. E., Kidd, J. M., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Bafna, V., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., James Kent, W., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Liu, X., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. P., Min Kang, H., Anderson, P., Angius, A., Bigham, A., Blackwell, T., Busonero, F., Cucca, F., Fuchsberger, C., Jones, C., Jun, G., Li, Y., Lyons, R., Maschio, A., Porcu, E., Reinier, F., Sanna, S., Schlessinger, D., Sidore, C., Tan, A., Kate Trost, M., Awadalla, P., Hodgkinson, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Ko, A., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Dooling, D., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Tyler-Smith, C., Albers, C. A., Ayub, Q., Chen, Y., Coffey, A. J., Colonna, V., Huang, N., Jostins, L., Li, H., Scally, A., Walter, K., Xue, Y., Zhang, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Fu, Y., Habegger, L., Harmanci, A. O., Jin, M., Khurana, E., Jasmine Mu, X., Sisu, C., Degenhardt, J., Stütz, A. M., Keira Cheetham, R., Church, D., Michaelson, J. J., Blackburne, B., Lindsay, S. J., Ning, Z., Frankish, A., Harrow, J., Mu, X. J., Fowler, G., Hale, W., Kalra, D., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Vaughan, B., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'Sullivan, C., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Gharani, N., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Reich, D., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Toji, L. H., Via, M., Wang, Y., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Ming, C. Z., Yang, G., Jia You, C., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Duncanson, A., Dunn, M., Guyer, M. S., Peterson, J. L. & Lacroute, P., 1 Nov 2012, In: Nature. 491, 7422, p. 56-65 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

6013 Scopus citations

CNVeM: Copy number variation detection using uncertainty of read mapping

Wang, Z., Hormozdiari, F., Yang, W. Y., Halperin, E. & Eskin, E., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 326-340 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia

Slager, S. L., Skibola, C. F., Di Bernardo, M. C., Conde, L., Broderick, P., McDonnell, S. K., Goldin, L. R., Croft, N., Holroyd, A., Harris, S., Riby, J., Serie, D. J., Kay, N. E., Call, T. G., Bracci, P. M., Halperin, E., Lanasa, M. C., Cunningham, J. M., Leis, J. F. & Morrison, V. A. & 14 others, Spector, L. G., Vachon, C. M., Shanafelt, T. D., Strom, S. S., Camp, N. J., Weinberg, J. B., Matutes, E., Caporaso, N. E., Wade, R., Dyer, M. J. S., Dearden, C., Cerhan, J. R., Catovsky, D. & Houlston, R. S., 26 Jul 2012, In: Blood. 120, 4, p. 843-846 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

65 Scopus citations

Fast and accurate inference of local ancestry in Latino populations

Baran, Y., Pasaniuc, B., Sankararaman, S., Torgerson, D. G., Gignoux, C., Eng, C., Rodriguez-Cintron, W., Chapela, R., Ford, J. G., Avila, P. C., Rodriguez-Santana, J., Burchard, E. G. & Halperin, E., May 2012, In: Bioinformatics. 28, 10, p. 1359-1367 9 p., bts144.

Research output: Contribution to journal › Article › peer-review

Open Access

169 Scopus citations

Haplotype reconstruction using perfect phylogeny and sequence data.

Efros, A. & Halperin, E., 2012, In: BMC Bioinformatics. 13 Suppl 6, p. S3 S3.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

Joint analysis of multiple metagenomic samples

Baran, Y. & Halperin, E., Feb 2012, In: PLoS Computational Biology. 8, 2, e1002373.

Research output: Contribution to journal › Article › peer-review

Open Access

17 Scopus citations

MGMR: leveraging RNA-Seq population data to optimize expression estimation.

Rozov, R., Halperin, E. & Shamir, R., 2012, In: BMC Bioinformatics. 13 Suppl 6, p. S2

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Probabilistic inference of viral quasispecies subject to recombination

Zagordi, O., Töpfer, A., Prabhakaran, S., Roth, V., Halperin, E. & Beerenwinkel, N., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 342-354 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

13 Scopus citations

PRRC2A and BCL2L11 gene variants influence risk of non-Hodgkin lymphoma: Results from the InterLymph consortium

Nieters, A., Conde, L., Slager, S. L., Brooks-Wilson, A., Morton, L., Skibola, D. R., Novak, A. J., Riby, J., Ansell, S. M., Halperin, E., Shanafelt, T. D., Agana, L., Wang, A. H., De Roos, A. J., Severson, R. K., Cozen, W., Spinelli, J., Butterbach, K., Becker, N. & De Sanjose, S. & 23 others, Benavente, Y., Cocco, P., Staines, A., Maynadié, M., Foretova, L., Boffetta, P., Brennan, P., Lan, Q., Zhang, Y., Zheng, T., Purdue, M., Armstrong, B., Kricker, A., Vajdic, C. M., Grulich, A., Smith, M. T., Bracci, P. M., Chanock, S. J., Hartge, P., Cerhan, J. R., Wang, S. S., Rothman, N. & Skibola, C. F., 29 Nov 2012, In: Blood. 120, 23, p. 4645-44648 40004 p.

Research output: Contribution to journal › Article › peer-review

Open Access

32 Scopus citations

2011

Abdominal aortic aneurysm is associated with a variant in low-density lipoprotein receptor-related protein 1

Bown, M. J., Jones, G. T., Harrison, S. C., Wright, B. J., Bumpstead, S., Baas, A. F., Gretarsdottir, S., Badger, S. A., Bradley, D. T., Burnand, K., Child, A. H., Clough, R. E., Cockerill, G., Hafez, H., Scott, D. J. A., Futers, S., Johnson, A., Sohrabi, S., Smith, A. & Thompson, M. M. & 461 others, van Bockxmeer, F. M., Waltham, M., Matthiasson, S. E., Thorleifsson, G., Thorsteinsdottir, U., Blankensteijn, J. D., Teijink, J. A. W., Wijmenga, C., de Graaf, J., Kiemeney, L. A., Assimes, T. L., McPherson, R., Folkersen, L., Franco-Cereceda, A., Palmen, J., Smith, A. J., Sylvius, N., Wild, J. B., Refstrup, M., Edkins, S., Gwilliam, R., Hunt, S. E., Potter, S., Lindholt, J. S., Frikke-Schmidt, R., Tybjærg-Hansen, A., Hughes, A. E., Golledge, J., Norman, P. E., van Rij, A., Powell, J. T., Eriksson, P., Stefansson, K., Thompson, J. R., Humphries, S. E., Sayers, R. D., Deloukas, P., Samani, N. J., Schunkert, H., König, I. R., Kathiresan, S., Reilly, M. P., Holm, H., Preuss, M., Stewart, A. F. R., Barbalic, M., Gieger, C., Absher, D., Aherrahrou, Z., Allayee, H., Altshuler, D., Anand, S. S., Andersen, K., Anderson, J. L., Ardissino, D., Ball, S. G., Balmforth, A. J., Barnes, T. A., Becker, D. M., Becker, L. C., Berger, K., Bis, J. C., Matthijs Boekholdt, S., Boerwinkle, E., Braund, P. S., Susan Burnett, M., Buysschaert, I., Carlquist, J. F., Chen, L., Cichon, S., Codd, V., Davies, R. W., Dedoussis, G., Dehghan, A., Demissie, S., Devaney, J. M., Diemert, P., Do, R., Doering, A., Eifert, S., El Mokhtari, N. E., Ellis, S. G., Elosua, R., Engert, J. C., Epstein, S. E., de Faire, U., Fischer, M., Folsom, A. R., Freyer, J., Gigante, B., Girelli, D., Gudnason, V., Gulcher, J. R., Halperin, E., Hammond, N., Hazen, S. L., Hofman, A., Horne, B. D., Illig, T., Iribarren, C., Wouter Jukema, J., Kaiser, M. A., Kaplan, L. M., Kastelein, J. J. P., Khaw, K. T., Knowles, J. W., Kolovou, G., Kong, A., Laaksonen, R., Lambrechts, D., Leander, K., Lettre, G., Li, M., Lieb, W., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meisinger, C., Meitinger, T., Melander, O., Angelica Merlini, P., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Münzel, T., Musunuru, K., Nahrstaedt, J., Nelson, C. P., Nöthen, M. M., Olivieri, O., Patel, R. S., Patterson, C. C., Peters, A., Peyvandi, F., Qu, L., Quyyumi, A. A., Rader, D. J., Rallidis, L. S., Rice, C., Rosendaal, F. R., Rubin, D., Salomaa, V., Lourdes Sampietro, M., Sandhu, M. S., Schadt, E., Schäfer, A., Schillert, A., Schreiber, S., Schrezenmeir, J., Schwartz, S. M., Siscovick, D. S., Sivananthan, M., Sivapalaratnam, S., Smith, T. B., Snoep, J. D., Soranzo, N., Spertus, J. A., Stark, K., Stirrups, K., Stoll, M., Wilson Tang, W. H., Tennstedt, S., Thorgeirsson, G., Tomaszewski, M., van Rij, A. M., Voight, B. F., Wareham, N. J., Wells, G. A., Wichmann, H. E., Wild, P. S., Willenborg, C., Witteman, J. C. M., Ye, S., Zeller, T., Ziegler, A., Cambien, F., Goodall, A. H., Adrienne Cupples, L., Quertermous, T., März, W., Hengstenberg, C., Blankenberg, S., Ouwehand, W. H., Hall, A. S., Roberts, R., O'Donnell, C. J., Erdmann, J., Newton-Cheh, C., Johnson, T., Gateva, V., Tobin, M. D., Bochud, M., Coin, L., Najjar, S. S., Hua Zhao, J., Heath, S. C., Eyheramendy, S., Papadakis, K., Scott, L. J., Zhang, F., Farrall, M., Tanaka, T., Wallace, C., Chambers, J. C., Nilsson, P., van der Harst, P., Polidoro, S., Grobbee, D. E., Onland-Moret, N. C., Bots, M. L., Wain, L. V., Elliott, K. S., Teumer, A., Luan, J., Lucas, G., Kuusisto, J., Burton, P. R., Hadley, D., McArdle, W. L., Brown, M., Dominiczak, A., Newhouse, S. J., Webster, J., Zeggini, E., Beckmann, J. S., Lim, N., Song, K., Vollenweider, P., Waeber, G., Waterworth, D. M., Yuan, X., Groop, L., Orho-Melander, M., Allione, A., Di Gregorio, A., Guarrera, S., Panico, S., Ricceri, F., Romanazzi, V., Sacerdote, C., Vineis, P., Barroso, I., Luben, R. N., Crawford, G. J., Jousilahti, P., Perola, M., Boehnke, M., Bonnycastle, L. L., Jackson, A. U., Mohlke, K. L., Stringham, H. M., Valle, T. T., Willer, C. J., Bergman, R. N., Morken, M. A., Döring, A., Org, E., Pfeufer, A., Marrugat, J., Subirana, I., Freimer, N. B., Hartikainen, A. L., McCarthy, M. I., O'Reilly, P. F., Peltonen, L., Pouta, A., de Jong, P. E., Snieder, H., van Gilst, W. H., Clarke, R., Goel, A., Hamsten, A., Peden, J. F., Seedorf, U., Syvänen, A. C., Tognoni, G., Lakatta, E. G., Sanna, S., Scheet, P., Schlessinger, D., Scuteri, A., Dörr, M., Ernst, F., Felix, S. B., Homuth, G., Lorbeer, R., Reffelmann, T., Rettig, R., Völker, U., Galan, P., Gut, I. G., Hercberg, S., Mark Lathrop, G., Zelenika, D., Williams, F. M., Zhai, G., Laakso, M., Forouhi, N. G., Völzke, H., Uiterwaal, C. S., van der Schouw, Y. T., Numans, M. E., Matullo, G., Navis, G., Berglund, G., Bingham, S. A., Kooner, J. S., Connell, J. M., Bandinelli, S., Ferrucci, L., Watkins, H., Spector, T. D., Tuomilehto, J., Strachan, D. P., Laan, M., Meneton, P., Uda, M., Jarvelin, M. R., Loos, R. J. F., Elliott, P., Abecasis, G. R., Caulfield, M., Munroe, P. B., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Huth, C., Aulchenko, Y. S., McCulloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Raychaudhuri, S., McCarroll, S. A., Langenberg, C., Hofmann, O. M., Dupuis, J., Qi, L., Segrè, A. V., van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Bengtsson Boström, K., Bravenboer, B., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, A. L., Elliott, A. L., Erdos, M. R., Fox, C. S., Franklin, C. S., Ganser, M., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Isomaa, B., Johnson, P. R. V., Jørgensen, T., Kao, W. H. L., Klopp, N., Kraft, P., Lauritzen, T., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Midthjell, K., Narisu, N., Owen, K. R., Payne, F., Perry, J. R. B., Petersen, A. K., Platou, C., Proença, C., Prokopenko, I., Rathmann, W., William Rayner, N., Robertson, N. R., Rocheleau, G., Roden, M., Sampson, M. J., Saxena, R., Shields, B. M., Shrader, P., Sigurdsson, G., Sparsø, T., Strassburger, K., Sun, Q., Swift, A. J., Thorand, B., Tichet, J., Tuomi, T., van Dam, R. M., van Haeften, T. W., van Herpt, T., van Vliet-Ostaptchouk, J. V., Bragi Walters, G., Weedon, M. N., Cauchi, S., Gloyn, A. L., Gyllensten, U., Hansen, T., Hide, W. A., Hitman, G. A., Hunter, D. J., Hveem, K., Morris, A. D., Palmer, C. N. A., Pramstaller, P. P., Rudan, I., Sijbrands, E., Stein, L. D., Uitterlinden, A., Walker, M., Watanabe, R. M., Boehm, B. O., Campbell, H., Daly, M. J., Hattersley, A. T., Hu, F. B., Meigs, J. B., Pankow, J. S., Pedersen, O., Florez, J. C., Frayling, T. M., Sladek, R., Wilson, J. F., Froguel, P., van Duijn, C. M., Blair, R. D., Hill, A. A., Gerry Hill, B., Lewis, D. R., McNoe, L. A., Merriman, T. R., Naik, D. K., Vicky Phillips, L., Thomson, I. A., Topless, R., Vasudevan, T. M. & Yu, G., 11 Nov 2011, In: American Journal of Human Genetics. 89, 5, p. 619-627 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

159 Scopus citations

Accurate estimation of expression levels of homologous genes in RNA-seq experiments

Paşaniuc, B., Zaitlen, N. & Halperin, E., 1 Mar 2011, In: Journal of Computational Biology. 18, 3, p. 459-468 10 p.

Research output: Contribution to journal › Article › peer-review

24 Scopus citations

A search for overlapping genetic susceptibility loci between non-Hodgkin lymphoma and autoimmune diseases

Conde, L., Bracci, P. M., Halperin, E. & Skibola, C. F., Jul 2011, In: Genomics. 98, 1, p. 9-14 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

15 Scopus citations

Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes

Strawbridge, R. J., Dupuis, J., Prokopenko, I., Barker, A., Ahlqvist, E., Rybin, D., Petrie, J. R., Travers, M. E., Bouatia-Naji, N., Dimas, A. S., Nica, A. C., Wheeler, E., Chen, H., Voight, B. F., Taneera, J., Kanoni, S., Peden, J. F., Turrini, F., Gustafsson, S. & Zabena, C. & 670 others, Almgren, P., Barker, D. J. P., Barnes, D., Dennison, E. M., Eriksson, J. G., Eriksson, P., Eury, E., Folkersen, L., Fox, C. S., Frayling, T. M., Goel, A., Gu, H. F., Horikoshi, M., Isomaa, B., Jackson, A. U., Jameson, K. A., Kajantie, E., Kerr-Conte, J., Kuulasmaa, T., Kuusisto, J., Loos, R. J. F., Luan, J., Makrilakis, K., Manning, A. K., Martínez-Larrad, M. T., Narisu, N., Mannila, M. N., Öhrvik, J., Osmond, C., Pascoe, L., Payne, F., Sayer, A. A., Sennblad, B., Silveira, A., Stančcáková, A., Stirrups, K., Swift, A. J., Syvänen, A. C., Tuomi, T., Van't Hooft, F. M., Walker, M., Weedon, M. N., Xie, W., Zethelius, B., Scott, L. J., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Zeggini, E., Huth, C., Aulchenko, Y. S., Thorleifsson, G., Mcculloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Willer, C. J., Raychaudhuri, S., McCarroll, S. A., Hofmann, O. M., Qi, L., Segre, A. V., Van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Boerwinkle, E., Bonnycastle, L. L., Bostrom, K. B., Bravenboer, B., Bumpstead, S., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, K. S., Elliott, A. L., Erdos, M. R., Franklin, C. S., Ganser, M., Gieger, C., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Johnson, P. R. V., Jorgensen, T., Kao, W. H. L., Klopp, N., Kong, A., Kraft, P., Lauritzen, T., Li, M., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Meitinger, T., Midthjell, K., Morken, M. A., Nilsson, P., Owen, K. R., Perry, J. R. B., Petersen, A. 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T., Wabitsch, M., Waeber, G., Watkins, H., Wright, A. F., Zillikens, M. C., Chatterjee, N., Purcell, S., Schadt, E. E., Visscher, P. M., Assimes, T. L., Borecki, I. B., Deloukas, P., Haritunians, T., Kaplan, R. C., O'Connell, J. R., Peltonen, L., Schlessinger, D., Strachan, D. P., North, K. E., Hirschhorn, J. N., Ingelsson, E., Parts, L., Glass, D., Nisbet, J., Barrett, A., Sekowska, M., Potter, S., Grundberg, E., Small, K., Hedman, A. K., Bataille, V., Bell, J. T., Surdulescu, G., Ingle, C., Nestle, F. O., Di Meglio, P., Min, J. L., Wilk, A., Hammond, C. J., Yang, T. P., Montgomery, S. B., Zondervan, K. T., Durbin, R., Ahmadi, K., Dermitzakis, E. T., Reilly, M. P., Holm, H., Stewart, A. F. R., Barbalic, M., Aherrahrou, Z., Allayee, H., Anand, S. S., Andersen, K., Anderson, J. L., Ardissino, D., Ball, S. G., Barnes, T. A., Becker, D. M., Becker, L. C., Berger, K., Bis, J. C., Boekholdt, S. M., Braund, P. S., Burnett, M. S., Buysschaert, I., Carlquist, J. 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R., Frossard, P., Danesh, J., Östenson, C. G., Lind, L., Cooper, C. C., Serrano-Ríos, M., Ferrannini, E., Forsen, T. J., Pattou, F., Langenberg, C., Hamsten, A. & Florez, J. C., 1 Oct 2011, In: Diabetes. 60, 10, p. 2624-2634 11 p.

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293 Scopus citations

Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure

LifeLines Cohort Study, EchoGen consortium, AortaGen Consortium, CHARGE Consortium Heart Failure Working Group, KidneyGen consortium & CKDGen consortium; Cardiogenics consortium; CardioGram, 1 Oct 2011, In: Nature Genetics. 43, 10, p. 1005-1012 8 p.

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361 Scopus citations

Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota

Kovacs, A., Ben-Jacob, N., Tayem, H., Halperin, E., Iraqi, F. A. & Gophna, U., Feb 2011, In: Microbial Ecology. 61, 2, p. 423-428 6 p.

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176 Scopus citations

Genotyping common and rare variation using overlapping pool sequencing

He, D., Zaitlen, N., Pasaniuc, B., Eskin, E. & Halperin, E., 28 Jul 2011, In: BMC Bioinformatics. 12, SUPPL.6, S2.

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Open Access

5 Scopus citations

Inhibition of activated pericentromeric SINE/Alu repeat transcription in senescent human adult stem cells reinstates self-renewal

Wang, J., Geesman, G. J., Hostikka, S. L., Atallah, M., Blackwell, B., Lee, E., Cook, P. J., Pasaniuc, B., Shariat, G., Halperin, E., Dobke, M., Rosenfeld, M. G., Jordan, I. K. & Lunyak, V. V., 1 Sep 2011, In: Cell Cycle. 10, 17, p. 3016-3030 15 p.

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89 Scopus citations

Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease

Schunkert, H., König, I. R., Kathiresan, S., Reilly, M. P., Assimes, T. L., Holm, H., Preuss, M., Stewart, A. F. R., Barbalic, M., Gieger, C., Absher, D., Aherrahrou, Z., Allayee, H., Altshuler, D., Anand, S. S., Andersen, K., Anderson, J. L., Ardissino, D., Ball, S. G. & Balmforth, A. J. & 147 others, Barnes, T. A., Becker, D. M., Becker, L. C., Berger, K., Bis, J. C., Boekholdt, S. M., Boerwinkle, E., Braund, P. S., Brown, M. J., Burnett, M. S., Buysschaert, I., Carlquist, J. F., Chen, L., Cichon, S., Codd, V., Davies, R. W., Dedoussis, G., Dehghan, A., Demissie, S., Devaney, J. M., Diemert, P., Do, R., Doering, A., Eifert, S., Mokhtari, N. E. E., Ellis, S. G., Elosua, R., Engert, J. C., Epstein, S. E., De Faire, U., Fischer, M., Folsom, A. R., Freyer, J., Gigante, B., Girelli, D., Gretarsdottir, S., Gudnason, V., Gulcher, J. R., Halperin, E., Hammond, N., Hazen, S. L., Hofman, A., Horne, B. D., Illig, T., Iribarren, C., Jones, G. T., Jukema, J. W., Kaiser, M. A., Kaplan, L. M., Kastelein, J. J. P., Khaw, K. T., Knowles, J. W., Kolovou, G., Kong, A., Laaksonen, R., Lambrechts, D., Leander, K., Lettre, G., Li, M., Lieb, W., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meisinger, C., Meitinger, T., Melander, O., Merlini, P. A., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Münzel, T., Musunuru, K., Nahrstaedt, J., Nelson, C. P., Nöthen, M. M., Olivieri, O., Patel, R. S., Patterson, C. C., Peters, A., Peyvandi, F., Qu, L., Quyyumi, A. A., Rader, D. J., Rallidis, L. S., Rice, C., Rosendaal, F. R., Rubin, D., Salomaa, V., Sampietro, M. L., Sandhu, M. S., Schadt, E., Scḧsignfer, A., Schillert, A., Schreiber, S., Schrezenmeir, J., Schwartz, S. M., Siscovick, D. S., Sivananthan, M., Sivapalaratnam, S., Smith, A., Smith, T. B., Snoep, J. D., Soranzo, N., Spertus, J. A., Stark, K., Stirrups, K., Stoll, M., Tang, W. H. W., Tennstedt, S., Thorgeirsson, G., Thorleifsson, G., Tomaszewski, M., Uitterlinden, A. G., Van Rij, A. M., Voight, B. F., Wareham, N. J., Wells, G. A., Wichmann, H. E., Wild, P. S., Willenborg, C., Witteman, J. C. M., Wright, B. J., Ye, S., Zeller, T., Ziegler, A., Cambien, F., Goodall, A. H., Cupples, L. A., Quertermous, T., Mäsignrz, W., Hengstenberg, C., Blankenberg, S., Ouwehand, W. H., Hall, A. S., Deloukas, P., Thompson, J. R., Stefansson, K., Roberts, R., Thorsteinsdottir, U., O'Donnell, C. J., McPherson, R., Erdmann, J. & Samani, N. J., Feb 2011, In: Nature Genetics. 43, 4, p. 333-340 8 p.

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1501 Scopus citations

Large-scale gene-centric analysis identifies novel variants for coronary artery disease

Butterworth, A. S., Braund, P. S., Farrall, M., Hardwick, R. J., Saleheen, D., Peden, J. F., Soranzo, N., Chambers, J. C., Sivapalaratnam, S., Kleber, M. E., Keating, B., Qasim, A., Klopp, N., Erdmann, J., Assimes, T. L., Ball, S. G., Balmforth, A. J., Barnes, T. A., Basart, H. & Baumert, J. & 327 others, Bezzina, C. R., Boerwinkle, E., Boehm, B. O., Brocheton, J., Bugert, P., Cambien, F., Clarke, R., Codd, V., Collins, R., Couper, D., Adrienne Cupples, L., de Jong, J. S., Diemert, P., Ejebe, K., Elbers, C. C., Elliott, P., Fornage, M., Franzosi, M. G., Frossard, P., Garner, S., Goel, A., Goodall, A. H., Hengstenberg, C., Hunt, S. E., Kastelein, J. J. P., Klungel, O. H., Klüterr, H., Koch, K., König, I. R., Kooner, A. S., Laaksonen, R., Lathrop, M., Li, M., Liu, K., McPherson, R., Musameh, M. D., Musani, S., Nelson, C. P., O'Donnell, C. J., Ongen, H., Papanicolaou, G., Peters, A., Peters, B. J. M., Potter, S., Psaty, B. M., Qu, L., Rader, D. J., Rasheed, A., Rice, C., Scott, J., Seedorf, U., Sehmi, J. S., Sotoodehnia, N., Stark, K., Stephens, J., van der Schoot, C. E., van der Schouw, Y. T., Thorsteinsdottir, U., Tomaszewski, M., van der Harst, P., Vasan, R. S., Wilde, A. A. M., Willenborg, C., Winkelmann, B. R., Zaidi, M., Zhang, W., Ziegler, A., de Bakker, P. I. W., Koenig, W., März, W., Trip, M. D., Reilly, M. P., Kathiresan, S., Schunkert, H., Hamsten, A., Hall, A. S., Kooner, J. S., Thompson, S. G., Thompson, J. R., Deloukas, P., Ouwehand, W. H., Watkins, H., Danesh, J., Samani, N. J., Rafelt, S., Bruinsma, N., Dekker, L. R., Henriques, J. P., de Winter, R. J., Alings, M., Allaart, C. F., Gorgels, A. P., Verheugt, F. W., Mueller, M., Meisinger, C., DerOhannessian, S., Mehta, N. N., Ferguson, J., Hakonarson, H., Matthai, W., Wilensky, R., Hopewell, J. 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R., Barbalic, M., Gieger, C., Absher, D., Aherrahrou, Z., Allayee, H., Altshuler, D., Anand, S., Andersen, K., Anderson, J. L., Ardissino, D., Becker, L. C., Becker, D. M., Berger, K., Bis, J. C., Matthijs Boekholdt, S., Brown, M. J., Susan Burnett, M., Buysschaert, I., Carlquist, J. F., Chen, L., Davies, R. W., Dedoussis, G., Dehghan, A., Demissie, S., Devaney, J., Do, R., Doering, A., El Mokhtari, N. E., Ellis, S. G., Elosua, R., Engert, J. C., Epstein, S., de Faire, U., Fischer, M., Folsom, A. R., Freyer, J., Gigante, B., Girelli, D., Gretarsdottir, S., Gudnason, V., Gulcher, J. R., Tennstedt, S., Halperin, E., Hammond, N., Hazen, S. L., Hofman, A., Horne, B. D., Illig, T., Iribarren, C., Jones, G. T., Wouter Jukema, J., Kaiser, M. A., Kaplan, L. M., Khaw, K. T., Knowles, J. W., Kolovou, G., Kong, A., Lambrechts, D., Leander, K., Lieb, W., Lettre, G., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meitinger, T., Melander, O., Angelica Merlini, P., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Musunuru, K., Nahrstaedt, J., Nöthen, M. M., Olivieri, O., Peyvandi, F., Patel, R. S., Patterson, C. C., Quyyumi, A. A., Rallidis, L. S., Roosendaal, F. R., Rubin, D., Salomaa, V., Lourdes Sampietro, M., Sandhu, M. S., Schadt, E., Schäfer, A., Schillert, A., Schreiber, S., Schrezenmeir, J., Schwartz, S. M., Siscovick, D. S., Sivananthan, M., Smith, A. V., Smith, T. B., Snoep, J. D., Spertus, J. A., Stefansson, K., Stirrups, K., Stoll, M., Wilson Tang, W. H., Thorgeirsson, G., Thorleifsson, G., Uitterlinden, A. G., van Rij, A. M., Voight, B. F., Wareham, N. J., Wells, G. A., Wichmann, H. E., Witteman, J. C. M., Wright, B. J., Ye, S., Quertermous, T., Blankenberg, S., Roberts, R., Onland-Moret, N. C., van Setten, J., Monique Verschuren, W. M., Boer, J. M. A., Wijmenga, C., Hofker, M. H., Maitland-van der Zee, A. H., de Boer, A., Grobbee, D. E., Attwood, T., Belz, S., Cooper, J., Crisp-Hihn, A., Foad, N., Gracey, J., Gray, E., Gwilliams, R., Heimerl, S., Jolley, J., Krishnan, U., Lloyd-Jones, H., Lugauer, I., Lundmark, P., Moore, J. S., Muir, D., Murray, E., Neudert, J., Niblett, D., O'Leary, K., Pollard, H., Rankin, A., Rice, C. M., Sager, H., Sambrook, J., Schmitz, G., Scholz, M., Schroeder, L., Syvannen, A. C. & Wallace, C., 1 Sep 2011, In: PLoS Genetics. 7, 9, e1002260.

Research output: Contribution to journal › Article › peer-review

Open Access

192 Scopus citations

Matrin 3 binds and stabilizes mRNA

Salton, M., Elkon, R., Borodina, T., Davydov, A., Yaspo, M. L., Halperin, E. & Shiloh, Y., 2011, In: PLoS ONE. 6, 8, e23882.

Research output: Contribution to journal › Article › peer-review

Open Access

121 Scopus citations

Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque

Bis, J. C., Kavousi, M., Franceschini, N., Isaacs, A., Abecasis, G. R., Schminke, U., Post, W. S., Smith, A. V., Cupples, L. A., Markus, H. S., Schmidt, R., Huffman, J. E., Lehtimäki, T., Baumert, J., Münzel, T., Heckbert, S. R., Dehghan, A., North, K., Oostra, B. & Bevan, S. & 73 others, Stoegerer, E. M., Hayward, C., Raitakari, O., Meisinger, C., Schillert, A., Sanna, S., Völzke, H., Cheng, Y. C., Thorsson, B., Fox, C. S., Rice, K., Rivadeneira, F., Nambi, V., Halperin, E., Petrovic, K. E., Peltonen, L., Wichmann, H. E., Schnabel, R. B., Dörr, M., Parsa, A., Aspelund, T., Demissie, S., Kathiresan, S., Reilly, M. P., Taylor, K., Uitterlinden, A., Couper, D. J., Sitzer, M., Kähönen, M., Illig, T., Wild, P. S., Orru, M., Lüdemann, J., Shuldiner, A. R., Eiriksdottir, G., White, C. C., Rotter, J. I., Hofman, A., Seissler, J., Zeller, T., Usala, G., Ernst, F., Launer, L. J., D'Agostino, R. B., O'Leary, D. H., Ballantyne, C., Thiery, J., Ziegler, A., Lakatta, E. G., Chilukoti, R. K., Harris, T. B., Wolf, P. A., Psaty, B. M., Polak, J. F., Li, X., Rathmann, W., Uda, M., Boerwinkle, E., Klopp, N., Schmidt, H., Wilson, J. F., Viikari, J., Koenig, W., Blankenberg, S., Newman, A. B., Witteman, J., Heiss, G., Duijn, C. V., Scuteri, A., Homuth, G., Mitchell, B. D., Gudnason, V. & O'Donnell, C. J., Oct 2011, In: Nature Genetics. 43, 10, p. 940-948 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

181 Scopus citations

Novel associations for coronary artery disease derived from genome wide association studies are not associated with increased carotid intima-media thickness, suggesting they do not act via early atherosclerosis or vessel remodeling

Conde, L., Bevan, S., Sitzer, M., Klopp, N., Illig, T., Thiery, J., Seissler, J., Baumert, J., Raitakari, O., Kähönen, M., Lyytikäinen, L. P., Laaksonen, R., Viikari, J., Lehtimäki, T., Koernig, W., Halperin, E. & Markus, H. S., Dec 2011, In: Atherosclerosis. 219, 2, p. 684-689 6 p.

Research output: Contribution to journal › Article › peer-review

15 Scopus citations

Pedigree reconstruction using identity by descent

Kirkpatrick, B., Li, S. C., Karp, R. M. & Halperin, E., 1 Nov 2011, In: Journal of Computational Biology. 18, 11, p. 1481-1493 13 p.

Research output: Contribution to journal › Article › peer-review

23 Scopus citations

Pedigree Reconstruction Using Identity by Descent

Kirkpatrick, B., Li, S. C., Karp, R. M. & Halperin, E., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 136-152 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

8 Scopus citations

RANTES/CCL5 and risk for coronary events: Results from the MONICA/KORA Augsburg case-cohort, Athero-express and CARDIoGRAM studies

Kathiresan, S., Reilly, M. P., Samani, N. J., Schunkert, H., Erdmann, J., Assimes, T. L., Boerwinkle, E., Hall, A., Hengstenberg, C., König, I. R., Laaksonen, R., McPherson, R., Thompson, J. R., Thorsteinsdottir, U., Ziegler, A., Absher, D., Chen, L., Cupples, L. A., Halperin, E. & Li, M. & 135 others, Musunuru, K., Preuss, M., Schillert, A., Thorleifsson, G., Voight, B. F., Wells, G. A., Deloukas, P., Holm, H., Roberts, R., Stewart, A. F. R., Fortmann, S., Go, A., Hlatky, M., Iribarren, C., Knowles, J., Myers, R., Quertermous, T., Sidney, S., Risch, N., Tang, H., Blankenberg, S., Zeller, T., Wild, P., Schnabel, R., Sinning, C., Lackner, K., Tiret, L., Nicaud, V., Cambien, F., Bickel, C., Rupprecht, H. J., Perret, C., Proust, C., Münzel, T., Barbalic, M., Bis, J., Chen, I. Y. D., Dehghan, A., Demissie-Banjaw, S., Folsom, A., Glazer, N., Gudnason, V., Harris, T., Heckbert, S., Levy, D., Lumley, T., Marciante, K., Morrison, A., O'Donnell, C. J., Psaty, B. M., Rice, K., Rotter, J. I., Siscovick, D. S., Smith, N., Smith, A., Taylor, K. D., van Duijn, C., Volcik, K., Whitteman, J., Ramachandran, V., Hofman, A., Uitterlinden, A., Gretarsdottir, S., Gulcher, J. R., Kong, A., Stefansson, K., Thorgeirsson, G., Andersen, K., Fischer, M., Grosshennig, A., Lieb, W., Linsel-Nitschke, P., Stark, K., Schreiber, S., Wichmann, H. E., Aherrahrou, Z., Bruse, P., Doering, A., Illig, T., Klopp, N., Loley, C., Medack, A., Meisinger, C., Meitinger, T., Nahrstedt, J., Peters, A., Wagner, A. K., Willenborg, C., Böhm, B. O., Dobnig, H., Grammer, T. B., Hoffmann, M. M., Kleber, M., März, W., Meinitzer, A., Winkelmann, B. R., Pilz, S., Renner, W., Scharnagl, H., Stojakovic, T., Tomaschitz, A., Winkler, K., Guiducci, C., Burtt, N., Gabriel, S. B., Elosua, R., Peltonen, L., Salomaa, V., Schwartz, S. M., Melander, O., Altshuler, D., Dandona, S., Jarinova, O., Qu, L., Wilensky, R., Matthai, W., Hakonarson, H. H., Devaney, J., Burnett, M. S., Pichard, A. D., Kent, K. M., Satler, L., Lindsay, J. M., Waksman, R., Knouff, C. W., Waterworth, D. M., Walker, M. C., Mooser, V., Epstein, S. E., Rader, D. J., Braund, P. S., Nelson, C. P., Wright, B. J., Balmforth, A. J. & Ball, S. G., 6 Dec 2011, In: PLoS ONE. 6, 12, e25734.

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

2010

Accurate estimation of expression levels of homologous genes in RNA-seq experiments

Paşaniuc, B., Zaitlen, N. & Halperin, E., 2010, Research in Computational Molecular Biology - 14th Annual International Conference, RECOMB 2010, Proceedings. p. 397-409 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6044 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

15 Scopus citations

A generic coalescent-based framework for the selection of a reference panel for imputation

Paşaniuc, B., Avinery, R., Gur, T., Skibola, C. F., Bracci, P. M. & Halperin, E., Dec 2010, In: Genetic Epidemiology. 34, 8, p. 773-782 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Chemokine polymorphisms and lymphoma: A pooled analysis

Bracci, P. M., Skibola, C. F., Conde, L., Halperin, E., Lightfoot, T., Smith, A., Paynter, R. A., Skibola, D. R., Agana, L., Roman, E., Kane, E. & Wiencke, J. K., Mar 2010, In: Leukemia and Lymphoma. 51, 3, p. 497-506 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

20 Scopus citations

Design of the coronary ARtery disease genome-wide replication and meta-Analysis (CARDIoGRAM) study: A genome-wide association meta-analysis involving more than 22 000 cases and 60 000 controls

Preuss, M., König, I. R., Thompson, J. R., Erdmann, J., Absher, D., Assimes, T. L., Blankenberg, S., Boerwinkle, E., Chen, L., Cupples, L. A., Hall, A. S., Halperin, E., Hengstenberg, C., Holm, H., Laaksonen, R., Li, M., Marz, W., McPherson, R., Musunuru, K. & Nelson, C. P. & 17 others, Burnett, M. S., Epstein, S. E., O'Donnell, C. J., Quertermous, T., Rader, D. J., Roberts, R., Schillert, A., Stefansson, K., Stewart, A. F. R., Thorleifsson, G., Voight, B. F., Wells, G. A., Ziegler, A., Kathiresan, S., Reilly, M. P., Samani, N. J. & Schunkert, H., Oct 2010, In: Circulation: Cardiovascular Genetics. 3, 5, p. 475-483 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

151 Scopus citations

Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32

Conde, L., Halperin, E., Akers, N. K., Brown, K. M., Smedby, K. E., Rothman, N., Nieters, A., Slager, S. L., Brooks-Wilson, A., Agana, L., Riby, J., Liu, J., Adami, H. O., Darabi, H., Hjalgrim, H., Low, H. Q., Humphreys, K., Melbye, M., Chang, E. T. & Glimelius, B. & 51 others, Cozen, W., Davis, S., Hartge, P., Morton, L. M., Schenk, M., Wang, S. S., Armstrong, B., Kricker, A., Milliken, S., Purdue, M. P., Vajdic, C. M., Boyle, P., Lan, Q., Zahm, S. H., Zhang, Y., Zheng, T., Becker, N., Benavente, Y., Boffetta, P., Brennan, P., Butterbach, K., Cocco, P., Foretova, L., Maynadié, M., De Sanjosé, S., Staines, A., Spinelli, J. J., Achenbach, S. J., Call, T. G., Camp, N. J., Glenn, M., Caporaso, N. E., Cerhan, J. R., Cunningham, J. M., Goldin, L. R., Hanson, C. A., Kay, N. E., Lanasa, M. C., Leis, J. F., Marti, G. E., Rabe, K. G., Rassenti, L. Z., Spector, L. G., Strom, S. S., Vachon, C. M., Weinberg, J. B., Holly, E. A., Chanock, S., Smith, M. T., Bracci, P. M. & Skibola, C. F., Aug 2010, In: Nature Genetics. 42, 8, p. 661-664 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

138 Scopus citations

Haplotype inference in complex pedigrees

Kirkpatrick, B., Halperin, E. & Karp, R. M., 1 Mar 2010, In: Journal of Computational Biology. 17, 3, p. 269-280 12 p.

Research output: Contribution to journal › Article › peer-review

8 Scopus citations

Leveraging Genetic Variability across Populations for the Identification of Causal Variants

Zaitlen, N., Paşaniuc, B., Gur, T., Ziv, E. & Halperin, E., 2010, In: American Journal of Human Genetics. 86, 1, p. 23-33 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

112 Scopus citations

miRNAkey: A software for microRNA deep sequencing analysis

Ronen, R., Gan, I., Modai, S., Sukacheov, A., Dror, G., Halperin, E. & Shomron, N., 27 Aug 2010, In: Bioinformatics. 26, 20, p. 2615-2616 2 p., btq493.

Research output: Contribution to journal › Article › peer-review

Open Access

74 Scopus citations

Presymptomatic risk assessment for chronic non-communicable diseases

Padhukasahasram, B., Halperin, E., Wessel, J., Thomas, D. J., Silver, E., Trumbower, H., Cargill, M. & Stephan, D. A., 2010, In: PLoS ONE. 5, 12, e14338.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

2009

Detection of molecular paths associated with insulitis and type 1 diabetes in non-obese diabetic mouse

Lindfors, E., Gopalacharyulu, P. V., Halperin, E. & Orešič, M., 2 Oct 2009, In: PLoS ONE. 4, 10, e7323.

Research output: Contribution to journal › Article › peer-review

Open Access

20 Scopus citations

Dynamic network topology changes in functional modules predict responses to oxidative stress in yeast

Gopalacharyulu, P. V., Velagapudi, V. R., Lindfors, E., Halperin, E. & Orešič, M., 2009, In: Molecular BioSystems. 5, 3, p. 276-287 12 p.

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Genetic variants at 6p21.33 are associated with susceptibility to follicular lymphoma

Skibola, C. F., Bracci, P. M., Halperin, E., Conde, L., Craig, D. W., Agana, L., Iyadurai, K., Becker, N., Brooks-Wilson, A., Curry, J. D., Spinelli, J. J., Holly, E. A., Riby, J., Zhang, L., Nieters, A., Smith, M. T. & Brown, K. M., Aug 2009, In: Nature Genetics. 41, 8, p. 873-875 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

132 Scopus citations

Genomic privacy and limits of individual detection in a pool

Sankararaman, S., Obozinski, G., Jordan, M. I. & Halperin, E., Sep 2009, In: Nature Genetics. 41, 9, p. 965-967 3 p.

Research output: Contribution to journal › Article › peer-review

142 Scopus citations

Haplotype inference in complex pedigrees

Kirkpatrick, B., Rosa, J., Halperin, E. & Karp, R. M., 2009, Research in Computational Molecular Biology - 13th Annual International Conference, RECOMB 2009, Proceedings. Springer Verlag, p. 108-120 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5541 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Increasing the Power of Association Studies by Imputation-based Sparse Tag SNP Selection.

Davidovich, O., Kimmel, G., Halperin, E. & Shamir, R., 2009, In: Communications in Information and Systems. 9, 3, p. 269-282

Research output: Contribution to journal › Article › peer-review

Inference of locus-specific ancestry in closely related populations

Paşaniuc, B., Sankararaman, S., Kimmel, G. & Halperin, E., 2009, In: Bioinformatics. 25, 12, p. i213-i221

Research output: Contribution to journal › Article › peer-review

Open Access

110 Scopus citations

Maximizing power in association studies

Halperin, E. & Stephan, D. A., Mar 2009, In: Nature Biotechnology. 27, 3, p. 255-256 2 p.

Research output: Contribution to journal › Short survey › peer-review

8 Scopus citations

SNP imputation in association studies

Halperin, E. & Stephan, D. A., Apr 2009, In: Nature Biotechnology. 27, 4, p. 349-351 3 p.

Research output: Contribution to journal › Article › peer-review

45 Scopus citations

2008

Association Mapping and Significance Estimation via the Coalescent

Kimmel, G., Karp, R. M., Jordan, M. I. & Halperin, E., 12 Dec 2008, In: American Journal of Human Genetics. 83, 6, p. 675-683 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

Estimating Local Ancestry in Admixed Populations

Sankararaman, S., Sridhar, S., Kimmel, G. & Halperin, E., 8 Feb 2008, In: American Journal of Human Genetics. 82, 2, p. 290-303 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

263 Scopus citations

On the inference of ancestries in admixed populations

Sankararaman, S., Kimmel, G., Halperin, E. & Jordan, M. I., Apr 2008, In: Genome Research. 18, 4, p. 668-675 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

36 Scopus citations

On the inference of ancestries in admixed populations

Sankararaman, S., Kimmel, G., Halperin, E. & Jordan, M. I., 2008, Research in Computational Molecular Biology - 12th Annual International Conference, RECOMB 2008, Proceedings. p. 424-433 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4955 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Polymorphisms in the estrogen receptor 1 and vitamin C and matrix metalloproteinase gene families are associated with susceptibility to lymphoma

Skibola, C. F., Bracci, P. M., Halperin, E., Nieters, A., Hubbard, A., Paynter, R. A., Skibola, D. R., Agana, L., Becker, N., Tressler, P., Forrest, M. S., Sankararaman, S., Conde, L., Holly, E. A. & Smith, M. T., 30 Aug 2008, In: PLoS ONE. 3, 7, e2816.

Research output: Contribution to journal › Article › peer-review

Open Access

73 Scopus citations

2007

Algorithms for efficient near-perfect phylogenetic tree reconstruction in theory and practice

Sridhar, S., Dhamdhere, K., Blelloch, G. E., Halperin, E., Ravi, R. & Schwartz, R., Oct 2007, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 4, 4, p. 561-570 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

An efficient and accurate graph-based approach to detect population substructure

Sridhar, S., Rao, S. & Halperin, E., 2007, Research in Computational Molecular Biology - 11th Annual International Conference, RECOMB 2007, Proceedings. Springer Verlag, p. 503-517 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4453 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

7 Scopus citations

Eran Halperin

Research output

Search results