Eran Halperin

2018

Opening the black box: Understanding the science behind big data and predictive analytics

Hofer, I. S., Halperin, E. & Cannesson, M., 2018, In: Anesthesia and Analgesia. 127, 5, p. 1139-1143 5 p.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Tensor composition analysis detects cell-type specific associations in epigenetic studies

Rahmani, E., Schweiger, R., Rosset, S., Sankararaman, S. & Halperin, E., 2018, Research in Computational Molecular Biology - 22nd Annual International Conference, RECOMB 2018, Proceedings. Raphael, B. J. (ed.). Springer Verlag, p. 274-275 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10812 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

The European Collaborative Project on Inflammation and Vascular Wall Remodeling in Atherosclerosis - Intravascular Ultrasound (ATHEROREMO-IVUS) study

De Boer, S. P. M., Baran, Y., Garcia-Garcia, H. M., Eskin, I., Lenzen, M. J., Kleber, M. E., Regar, E., De Jaegere, P. J., Ligthart, J. M., Van Geuns, R. J., Lehtimäki, T., Laaksonen, R., Boersma, E., März, W., Halperin, E., Serruys, P. W. & Koenig, W., Jun 2018, In: EuroIntervention. 14, 2, p. 194-203 10 p.

Research output: Contribution to journal › Article › peer-review

14 Scopus citations

Using stochastic approximation techniques to efficiently construct confidence intervals for heritability

Schweiger, R., Fisher, E., Rahmani, E., Shenhav, L., Rosset, S. & Halperin, E., Jul 2018, In: Journal of Computational Biology. 25, 7, p. 794-808 15 p.

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

2017

A bayesian framework for estimating cell type composition from DNA methylation without the need for methylation reference

Rahmani, E., Schweiger, R., Shenhav, L., Eskin, E. & Halperin, E., 2017, Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Proceedings. Sahinalp, S. C. (ed.). Springer Verlag, p. 207-223 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10229 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

3 Scopus citations

Association testing of bisulfite-sequencing methylation data via a Laplace approximation

Weissbrod, O., Rahmani, E., Schweiger, R., Rosset, S. & Halperin, E., 15 Jul 2017, In: Bioinformatics. 33, 14, p. i325-i332

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

Causal effect of plasminogen activator inhibitor type 1 on coronary heart disease

CHARGE Consortium Hemostatic Factor Working Group, ICBP Consortium & CHARGE Consortium Subclinical Working Group, 1 Jun 2017, In: Journal of the American Heart Association. 6, 6, e004918.

Research output: Contribution to journal › Article › peer-review

Open Access

94 Scopus citations

Correcting for cell-type heterogeneity in DNA methylation: A comprehensive evaluation

Rahmani, E., Zaitlen, N., Baran, Y., Eng, C., Hu, D., Galanter, J., Oh, S., Burchard, E. G., Eskin, E., Zou, J. & Halperin, E., 28 Feb 2017, In: Nature Methods. 14, 3, p. 218-219 2 p.

Research output: Contribution to journal › Letter › peer-review

Open Access

23 Scopus citations

Correspondence

Rahmani, E., Zaitlen, N., Baran, Y., Eng, C., Hu, D., Galanter, J., Oh, S., Burchard, E. G., Eskin, E., Zou, J. & Halperin, E., 28 Feb 2017, In: Nature Methods. 14, 3, p. 219 1 p.

Research output: Contribution to journal › Letter › peer-review

Open Access

Genome-wide methylation data mirror ancestry information

Rahmani, E., Shenhav, L., Schweiger, R., Yousefi, P., Huen, K., Eskenazi, B., Eng, C., Huntsman, S., Hu, D., Galanter, J., Oh, S. S., Waldenberger, M., Strauch, K., Grallert, H., Meitinger, T., Gieger, C., Holland, N., Burchard, E. G., Zaitlen, N. & Halperin, E., 3 Jan 2017, In: Epigenetics and Chromatin. 10, 1, 12 p., 1.

Research output: Contribution to journal › Article › peer-review

Open Access

63 Scopus citations

GLINT: A user-friendly toolset for the analysis of high-throughput DNA-methylation array data

Rahmani, E., Yedidim, R., Shenhav, L., Schweiger, R., Weissbrod, O., Zaitlen, N. & Halperin, E., 15 Jun 2017, In: Bioinformatics. 33, 12, p. 1870-1872 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

41 Scopus citations

Heritable bovine rumen bacteria are phylogenetically related and correlated with the cow’s capacity to harvest energy from its feed

Sasson, G., Ben-Shabat, S. K., Seroussi, E., Doron-Faigenboim, A., Shterzer, N., Yaacoby, S., Miller, M. E. B., White, B. A., Halperin, E. & Mizrahi, I., 1 Jul 2017, In: mBio. 8, 4, e00703-17.

Research output: Contribution to journal › Article › peer-review

Open Access

109 Scopus citations

Recycler: An algorithm for detecting plasmids from de novo assembly graphs

Rozov, R., Kav, A. B., Bogumil, D., Shterzer, N., Halperin, E., Mizrahi, I. & Shamir, R., 15 Feb 2017, In: Bioinformatics. 33, 4, p. 475-482 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

89 Scopus citations

Rheumatoid Arthritis Naive T Cells Share Hypermethylation Sites With Synoviocytes

Rhead, B., Holingue, C., Cole, M., Shao, X., Quach, H. L., Quach, D., Shah, K., Sinclair, E., Graf, J., Link, T., Harrison, R., Rahmani, E., Halperin, E., Wang, W., Firestein, G. S., Barcellos, L. F. & Criswell, L. A., 1 Mar 2017, In: Arthritis and Rheumatology. 69, 3, p. 550-559 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

43 Scopus citations

RL-SKAT: An exact and efficient score test for heritability and set tests

Schweiger, R., Weissbrod, O., Rahmani, E., Müller-Nurasyid, M., Kunze, S., Gieger, C., Waldenberger, M., Rosset, S. & Halperin, E., Dec 2017, In: Genetics. 207, 4, p. 1275-1283 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

14 Scopus citations

Self-censorship as a socio-psychological barrier to peacemaking.

Hameiri, B., Bar-Tal, D. & Halperin, E., 2017, Self-censorship in contexts of conflict: Theory and research.. Bar-Tal, D., Nets-Zehngut, R. & Sharvit, K. (eds.). Cham, Switzerland: Springer International Publishing AG, p. 61-78 18 p. (Peace psychology book series.).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

The effects of migration and assortative mating on admixture linkage disequilibrium

Zaitlen, N., Huntsman, S., Hu, D., Spear, M., Eng, C., Oh, S. S., White, M. J., Mak, A., Davis, A., Meade, K., Brigino-Buenaventura, E., LeNoir, M. A., Bibbins-Domingo, K., Burchard, E. G. & Halperin, E., Jan 2017, In: Genetics. 205, 1, p. 375-383 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Using stochastic approximation techniques to efficiently construct confidence intervals for heritability

Schweiger, R., Fisher, E., Rahmani, E., Shenhav, L., Rosset, S. & Halperin, E., 2017, Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Proceedings. Sahinalp, S. C. (ed.). Springer Verlag, p. 241-256 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10229 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

2016

Fast and Accurate Construction of Confidence Intervals for Heritability

Schweiger, R., Kaufman, S., Laaksonen, R., Kleber, M. E., März, W., Eskin, E., Rosset, S. & Halperin, E., 2 Jun 2016, In: American Journal of Human Genetics. 98, 6, p. 1181-1192 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

20 Scopus citations

Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function

Pattaro, C., Teumer, A., Gorski, M., Chu, A. Y., Li, M., Mijatovic, V., Garnaas, M., Tin, A., Sorice, R., Li, Y., Taliun, D., Olden, M., Foster, M., Yang, Q., Chen, M. H., Pers, T. H., Johnson, A. D., Ko, Y. A., Fuchsberger, C. & Tayo, B. & 678 others, Nalls, M., Feitosa, M. F., Isaacs, A., Dehghan, A., D'Adamo, P., Adeyemo, A., Dieffenbach, A. K., Zonderman, A. B., Nolte, I. M., Van Der Most, P. J., Wright, A. F., Shuldiner, A. R., Morrison, A. C., Hofman, A., Smith, A. V., Dreisbach, A. W., Franke, A., Uitterlinden, A. G., Metspalu, A., Tonjes, A., Lupo, A., Robino, A., Johansson, Å., Demirkan, A., Kollerits, B., Freedman, B. I., Ponte, B., Oostra, B. A., Paulweber, B., Krämer, B. K., Mitchell, B. D., Buckley, B. M., Peralta, C. A., Hayward, C., Helmer, C., Rotimi, C. N., Shaffer, C. M., Müller, C., Sala, C., Van Duijn, C. M., Saint-Pierre, A., Ackermann, D., Shriner, D., Ruggiero, D., Toniolo, D., Lu, Y., Cusi, D., Czamara, D., Ellinghaus, D., Siscovick, D. S., Ruderfer, D., Gieger, C., Grallert, H., Rochtchina, E., Atkinson, E. J., Holliday, E. G., Boerwinkle, E., Salvi, E., Bottinger, E. P., Murgia, F., Rivadeneira, F., Ernst, F., Kronenberg, F., Hu, F. B., Navis, G. J., Curhan, G. C., Ehret, G. B., Homuth, G., Coassin, S., Thun, G. A., Pistis, G., Gambaro, G., Malerba, G., Montgomery, G. W., Eiriksdottir, G., Jacobs, G., Li, G., Wichmann, H. E., Campbell, H., Schmidt, H., Wallaschofski, H., Völzke, H., Brenner, H., Kroemer, H. K., Kramer, H., Lin, H., Leach, I. M., Ford, I., Guessous, I., Rudan, I., Prokopenko, I., Borecki, I., Heid, I. M., Kolcic, I., Persico, I., Jukema, J. W., Wilson, J. F., Felix, J. F., Divers, J., Lambert, J. C., Stafford, J. M., Gaspoz, J. M., Smith, J. A., Faul, J. D., Wang, J. J., Ding, J., Hirschhorn, J. N., Attia, J., Whitfield, J. B., Chalmers, J., Viikari, J., Coresh, J., Denny, J. C., Karjalainen, J., Fernandes, J. K., Endlich, K., Butterbach, K., Keene, K. L., Lohman, K., Portas, L., Launer, L. J., Lyytikäinen, L. P., Yengo, L., Franke, L., Ferrucci, L., Rose, L. M., Kedenko, L., Rao, M., Struchalin, M., Kleber, M. E., Cavalieri, M., Haun, M., Cornelis, M. C., Ciullo, M., Pirastu, M., De Andrade, M., McEvoy, M. A., Woodward, M., Adam, M., Cocca, M., Nauck, M., Imboden, M., Waldenberger, M., Pruijm, M., Metzger, M., Stumvoll, M., Evans, M. K., Sale, M. M., Kähönen, M., Boban, M., Bochud, M., Rheinberger, M., Verweij, N., Bouatia-Naji, N., Martin, N. G., Hastie, N., Probst-Hensch, N., Soranzo, N., Devuyst, O., Raitakari, O., Gottesman, O., Franco, O. H., Polasek, O., Gasparini, P., Munroe, P. B., Ridker, P. M., Mitchell, P., Muntner, P., Meisinger, C., Smit, J. H., Abecasis, G. R., Adair, L. S., Alexander, M., Altshuler, D., Amin, N., Arking, D. E., Arora, P., Aulchenko, Y., Bakker, S. J. L., Bandinelli, S., Barroso, I., Beckmann, J. S., Beilby, J. P., Bergman, R. N., Bergmann, S., Bis, J. C., Boehnke, M., Bonnycastle, L. L., Bornstein, S. R., Bots, M. L., Bragg-Gresham, J. L., Brand, S. M., Brand, E., Braund, P. S., Brown, M. J., Burton, P. R., Casas, J. P., Caulfield, M. J., Chakravarti, A., Chambers, J. C., Chandak, G. R., Chang, Y. P. C., Charchar, F. J., Chaturvedi, N., Cho, Y. S., Clarke, R., Collins, F. S., Collins, R., Connell, J. M., Cooper, J. A., Cooper, M. N., Cooper, R. S., Corsi, A. M., Dörr, M., Dahgam, S., Danesh, J., Smith, G. D., Day, I. N. M., Deloukas, P., Denniff, M., Dominiczak, A. F., Dong, Y., Doumatey, A., Elliott, P., Elosua, R., Erdmann, J., Eyheramendy, S., Farrall, M., Fava, C., Forrester, T., Fowkes, F. G. R., Fox, E. R., Frayling, T. M., Galan, P., Ganesh, S. K., Garcia, M., Gaunt, T. R., Glazer, N. L., Go, M. J., Goel, A., Grässler, J., Grobbee, D. E., Groop, L., Guarrera, S., Guo, X., Hadley, D., Hamsten, A., Han, B. G., Hardy, R., Hartikainen, A. L., Heath, S., Heckbert, S. R., Hedblad, B., Hercberg, S., Hernandez, D., Hicks, A. A., Hilton, G., Hingorani, A. D., Hoffman Bolton, J. A., Hopewell, J. C., Howard, P., Humphries, S. E., Hunt, S. C., Hveem, K., Ikram, M. A., Islam, M., Iwai, N., Jarvelin, M. R., Jackson, A. U., Jafar, T. H., Janipalli, C. S., Johnson, T., Kathiresan, S., Khaw, K. T., Kim, H. L., Kinra, S., Kita, Y., Kivimaki, M., Kooner, J. S., Kumar, M. J. K., Kuh, D., Kulkarni, S. R., Kumari, M., Kuusisto, J., Kuznetsova, T., Laakso, M., Laan, M., Laitinen, J., Lakatta, E. G., Langefeld, C. D., Larson, M. G., Lathrop, M., Lawlor, D. A., Lawrence, R. W., Lee, J. Y., Lee, N. R., Levy, D., Li, Y., Longstreth, W. T., Luan, J., Lucas, G., Ludwig, B., Mangino, M., Mani, K. R., Marmot, M. G., Mattace-Raso, F. U. S., Matullo, G., McArdle, W. L., McKenzie, C. A., Meitinger, T., Melander, O., Meneton, P., Meschia, J. F., Miki, T., Milaneschi, Y., Mohlke, K. L., Mooser, V., Morken, M. A., Morris, R. W., Mosley, T. H., Najjar, S., Narisu, N., Newton-Cheh, C., Nguyen, K. D. H., Nilsson, P., Nyberg, F., O'Donnell, C. J., Ogihara, T., Ohkubo, T., Okamura, T., Ong, R. T. H., Ongen, H., Onland-Moret, N. C., O'Reilly, P. F., Org, E., Orru, M., Palmas, W., Palmen, J., Palmer, L. J., Palmer, N. D., Parker, A. N., Peden, J. F., Peltonen, L., Perola, M., Pihur, V., Platou, C. G. P., Plump, A., Prabhakaran, D., Psaty, B. M., Raffel, L. J., Rao, D. C., Rasheed, A., Ricceri, F., Rice, K. M., Rosengren, A., Rotter, J. I., Rudock, M. E., Sõber, S., Salako, T., Saleheen, D., Salomaa, V., Samani, N. J., Schwartz, S. M., Schwarz, P. E. H., Scott, L. J., Scott, J., Scuteri, A., Sehmi, J. S., Seielstad, M., Seshadri, S., Sharma, P., Shaw-Hawkins, S., Shi, G., Shrine, N. R. G., Sijbrands, E. J. G., Sim, X., Singleton, A., Sjögren, M., Smith, N. L., Artigas, M. S., Spector, T. D., Staessen, J. A., Stancakova, A., Steinle, N. I., Strachan, D. P., Stringham, H. M., Sun, Y. V., Swift, A. J., Tabara, Y., Tai, E. S., Talmud, P. J., Taylor, A., Terzic, J., Thelle, D. S., Tobin, M. D., Tomaszewski, M., Tripathy, V., Tuomilehto, J., Tzoulaki, I., Uda, M., Ueshima, H., Uiterwaal, C. S. P. M., Umemura, S., Van Der Harst, P., Van Der Schouw, Y. T., Van Gilst, W. H., Vartiainen, E., Vasan, R. S., Veldre, G., Verwoert, G. C., Viigimaa, M., Vinay, D. G., Vineis, P., Voight, B. F., Vollenweider, P., Wagenknecht, L. E., Wain, L. V., Wang, X., Wang, T. J., Wareham, N. J., Watkins, H., Weder, A. B., Whincup, P. H., Wiggins, K. L., Witteman, J. C. M., Wong, A., Wu, Y., Yajnik, C. S., Yao, J., Young, J. H., Zelenika, D., Zhai, G., Zhang, W., Zhang, F., Zhao, J. H., Zhu, H., Zhu, X., Zitting, P., Zukowska-Szczechowska, E., Okada, Y., Wu, J. Y., Gu, D., Takeuchi, F., Takahashi, A., Maeda, S., Tsunoda, T., Chen, P., Lim, S. C., Wong, T. Y., Liu, J., Young, T. L., Aung, T., Teo, Y. Y., Kim, Y. J., Kang, D., Chen, C. H., Tsai, F. J., Chang, L. C., Fann, S. J. C., Mei, H., Hixson, J. E., Chen, S., Katsuya, T., Isono, M., Albrecht, E., Yamamoto, K., Kubo, M., Nakamura, Y., Kamatani, N., Kato, N., He, J., Chen, Y. T., Tanaka, T., Reilly, M. P., Schunkert, H., Assimes, T. L., Hall, A., Hengstenberg, C., König, I. R., Laaksonen, R., McPherson, R., Thompson, J. R., Thorsteinsdottir, U., Ziegler, A., Absher, D., Chen, L., Cupples, L. A., Halperin, E., Li, M., Musunuru, K., Preuss, M., Schillert, A., Thorleifsson, G., Wells, G. A., Holm, H., Roberts, R., Stewart, A. F. R., Fortmann, S., Go, A., Hlatky, M., Iribarren, C., Knowles, J., Myers, R., Quertermous, T., Sidney, S., Risch, N., Tang, H., Blankenberg, S., Schnabel, R., Sinning, C., Lackner, K. J., Tiret, L., Nicaud, V., Cambien, F., Bickel, C., Rupprecht, H. J., Perret, C., Proust, C., Münzel, T. F., Barbalic, M., Chen, I. Y. D., Demissie-Banjaw, S., Folsom, A., Lumley, T., Marciante, K., Taylor, K. D., Volcik, K., Gretarsdottir, S., Gulcher, J. R., Kong, A., Stefansson, K., Thorgeirsson, G., Andersen, K., Fischer, M., Grosshennig, A., Linsel-Nitschke, P., Stark, K., Schreiber, S., Aherrahrou, Z., Bruse, P., Doering, A., Klopp, N., Diemert, P., Loley, C., Medack, A., Nahrstedt, J., Peters, A., Wagner, A. K., Willenborg, C., Böhm, B. O., Dobnig, H., Grammer, T. B., Hoffmann, M. M., Meinitzer, A., Winkelmann, B. R., Pilz, S., Renner, W., Scharnagl, H., Stojakovic, T., Tomaschitz, A., Winkler, K., Guiducci, C., Burtt, N., Gabriel, S. B., Dandona, S., Jarinova, O., Qu, L., Wilensky, R., Matthai, W., Hakonarson, H. H., Devaney, J., Burnett, M. S., Pichard, A. D., Kent, K. M., Satler, L., Lindsay, J. M., Waksman, R., Knouff, C. W., Waterworth, D. M., Walker, M. C., Epstein, S. E., Rader, D. J., Nelson, C. P., Wright, B. J., Balmforth, A. J., Ball, S. G., Loehr, L. R., Rosamond, W. D., Benjamin, E., Haritunians, T., Couper, D., Murabito, J., Wang, Y. A., Stricker, B. H., Chang, P. P., Willerson, J. T., Felix, S. B., Watzinger, N., Aragam, J., Zweiker, R., Lind, L., Rodeheffer, R. J., Greiser, K. H., Deckers, J. W., Stritzke, J., Ingelsson, E., Kullo, I., Haerting, J., Reffelmann, T., Redfield, M. M., Werdan, K., Mitchell, G. F., Arnett, D. K., Gottdiener, J. S., Blettner, M., Friedrich, N., Kovacs, P., Wild, P. S., Froguel, P., Rettig, R., Mägi, R., Biffar, R., Schmidt, R., Middelberg, R. P. S., Carroll, R. J., Penninx, B. W., Scott, R. J., Katz, R., Sedaghat, S., Wild, S. H., Kardia, S. L. R., Ulivi, S., Hwang, S. J., Enroth, S., Kloiber, S., Trompet, S., Stengel, B., Hancock, S. J., Turner, S. T., Rosas, S. E., Stracke, S., Harris, T. B., Zeller, T., Zemunik, T., Lehtimäki, T., Illig, T., Aspelund, T., Nikopensius, T., Esko, T., Tanaka, T., Gyllensten, U., Völker, U., Emilsson, V., Vitart, V., Aalto, V., Gudnason, V., Chouraki, V., Chen, W. M., Igl, W., März, W., Koenig, W., Lieb, W., Loos, R. J. F., Liu, Y., Snieder, H., Pramstaller, P. P., Parsa, A., O'Connell, J. R., Susztak, K., Hamet, P., Tremblay, J., De Boer, I. H., Böger, C. A., Goessling, W., Chasman, D. I., Köttgen, A., Kao, W. H. L. & Fox, C. S., 21 Jan 2016, In: Nature Communications. 7, 10023.

Research output: Contribution to journal › Article › peer-review

Open Access

384 Scopus citations

Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies

Rahmani, E., Zaitlen, N., Baran, Y., Eng, C., Hu, D., Galanter, J., Oh, S., Burchard, E. G., Eskin, E., Zou, J. & Halperin, E., 1 May 2016, In: Nature Methods. 13, 5, p. 443-445 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

180 Scopus citations

The genetic history of Cochin Jews from India

Waldman, Y. Y., Biddanda, A., Dubrovsky, M., Campbell, C. L., Oddoux, C., Friedman, E., Atzmon, G., Halperin, E., Ostrer, H. & Keinan, A., 1 Oct 2016, In: Human Genetics. 135, 10, p. 1127-1143 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

The genetics of Bene Israel from India reveals both substantial Jewish and Indian ancestry

Waldman, Y. Y., Biddanda, A., Davidson, N. R., Billing-Ross, P., Dubrovsky, M., Campbell, C. L., Oddoux, C., Friedman, E., Atzmon, G., Halperin, E., Ostrer, H. & Keinan, A., Mar 2016, In: PLoS ONE. 11, 3, e0152056.

Research output: Contribution to journal › Article › peer-review

Open Access

13 Scopus citations

2015

A global reference for human genetic variation

Auton, A., Abecasis, G. R., Altshuler, D. M., Durbin, R. M., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H. & Mardis, E. R. & 457 others, Marth, G. T., McVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Boerwinkle, E., Doddapaneni, H., Han, Y., Korchina, V., Kovar, C., Lee, S., Muzny, D., Reid, J. G., Zhu, Y., Chang, Y., Feng, Q., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Lan, T., Li, G., Li, J., Li, Y., Liu, S., Liu, X., Lu, Y., Ma, X., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Xu, X., Yin, Y., Zhang, D., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Gupta, N., Gharani, N., Toji, L. H., Gerry, N. P., Resch, A. M., Barker, J., Clarke, L., Gil, L., Hunt, S. E., Kelman, G., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Roa, A., Smirnov, D., Smith, R. E., Streeter, I., Thormann, A., Toneva, I., Vaughan, B., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Church, D., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'Sullivan, C., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Campbell, C. L., Kong, Y., Marcketta, A., Yu, F., Antunes, L., Bainbridge, M., Sabo, A., Huang, Z., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Shao, H., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Alkan, C., Dal, E., Kahveci, F., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Stromberg, M., Ward, A. N., Wu, J., Zhang, M., Daly, M. J., DePristo, M. A., Handsaker, R. E., Banks, E., Bhatia, G., Del Angel, G., Genovese, G., Li, H., Kashin, S., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Yoon, S. C., Lihm, J., Makarov, V., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Rausch, T., Fritz, M. H., Stütz, A. M., Beal, K., Datta, A., Herrero, J., Ritchie, G. R. S., Zerbino, D., Sabeti, P. C., Shlyakhter, I., Schaffner, S. F., Vitti, J., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Cheetham, R. K., Cox, A., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Kenny, E. E., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Ding, L., Koboldt, D. C., Larson, D., Ye, K., Gravel, S., Swaroop, A., Chew, E., Lappalainen, T., Erlich, Y., Gymrek, M., Willems, T. F., Simpson, J. T., Shriver, M. D., Rosenfeld, J. A., Bustamante, C. D., Montgomery, S. B., De La Vega, F. M., Byrnes, J. K., Carroll, A. W., DeGorter, M. K., Lacroute, P., Maples, B. K., Martin, A. R., Moreno-Estrada, A., Shringarpure, S. S., Zakharia, F., Halperin, E., Baran, Y., Cerveira, E., Hwang, J., Malhotra, A., Plewczynski, D., Radew, K., Romanovitch, M., Zhang, C., Hyland, F. C. L., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Antaki, D., Gujral, M., Noor, A., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Devine, S. E., Kang, H. M., Kidd, J. M., Blackwell, T., Caron, S., Chen, W., Emery, S., Fritsche, L., Fuchsberger, C., Jun, G., Li, B., Lyons, R., Scheller, C., Sidore, C., Song, S., Sliwerska, E., Taliun, D., Tan, A., Welch, R., Wing, M. K., Zhan, X., Awadalla, P., Hodgkinson, A., Li, Y., Shi, X., Quitadamo, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Kretzschmar, W., Iqbal, Z., Mathieson, I., Menelaou, A., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Browning, S. R., Hormozdiari, F., Sudmant, P. H., Khurana, E., Tyler-Smith, C., Albers, C. A., Ayub, Q., Chen, Y., Colonna, V., Jostins, L., Walter, K., Xue, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Fu, Y., Harmanci, A. O., Jin, M., Lee, D., Liu, J., Mu, X. J., Zhang, J., Zhang, Y., Hartl, C., Shakir, K., Degenhardt, J., Meiers, S., Raeder, B., Casale, F. P., Stegle, O., Lameijer, E. W., Hall, I., Bafna, V., Michaelson, J., Gardner, E. J., Mills, R. E., Dayama, G., Chen, K., Fan, X., Chong, Z., Chen, T., Chaisson, M. J., Huddleston, J., Malig, M., Nelson, B. J., Parrish, N. F., Blackburne, B., Lindsay, S. J., Ning, Z., Zhang, Y., Lam, H., Sisu, C., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Yu, J., Li, W., Habegger, L., Yu, H., Cunningham, F., Dunham, I., Lage, K., Jespersen, J. B., Horn, H., Kim, D., Desalle, R., Narechania, A., Sayres, M. A. W., Mendez, F. L., Poznik, G. D., Underhill, P. A., Mittelman, D., Banerjee, R., Cerezo, M., Fitzgerald, T. W., Louzada, S., Massaia, A., Yang, F., Kalra, D., Hale, W., Dan, X., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Via, M., Wang, Y., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Cai, Z., Gao, Y., Chu, J., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Mathias, R. A., Hennis, A., Watson, H., McKenzie, C., Qadri, F., LaRocque, R., Deng, X., Asogun, D., Folarin, O., Happi, C., Omoniwa, O., Stremlau, M., Tariyal, R., Jallow, M., Joof, F. S., Corrah, T., Rockett, K., Kwiatkowski, D., Kooner, J., Hien, T. T., Dunstan, S. J., ThuyHang, N., Fonnie, R., Garry, R., Kanneh, L., Moses, L., Schieffelin, J., Grant, D. S., Gallo, C., Poletti, G., Saleheen, D., Rasheed, A., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Vaydylevich, Y., Duncanson, A., Dunn, M. & Schloss, J. A., 30 Sep 2015, In: Nature. 526, 7571, p. 68-74 7 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

10764 Scopus citations

A Note on the Relations between Spatio-Genetic Models

Baran, Y. & Halperin, E., 1 Oct 2015, In: Journal of Computational Biology. 22, 10, p. 905-917 13 p.

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Characterization of whole-genome autosomal differences of DNA methylation between men and women

Singmann, P., Shem-Tov, D., Wahl, S., Grallert, H., Fiorito, G., Shin, S. Y., Schramm, K., Wolf, P., Kunze, S., Baran, Y., Guarrera, S., Vineis, P., Krogh, V., Panico, S., Tumino, R., Kretschmer, A., Gieger, C., Peters, A., Prokisch, H. & Relton, C. L. & 4 others, Matullo, G., Illig, T., Waldenberger, M. & Halperin, E., Dec 2015, In: Epigenetics and Chromatin. 8, 1, 35.

Research output: Contribution to journal › Article › peer-review

Open Access

127 Scopus citations

Inferring parental genomic ancestries using pooled semi-Markov processes

Zou, J. Y., Halperin, E., Burchard, E. & Sankararaman, S., 15 Jun 2015, In: Bioinformatics. 31, 12, p. i190-i196

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

Multiple-ancestor localization for recently admixed individuals

Margalit, Y., Baran, Y. & Halperin, E., 2015, Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Verlag, p. 121-135 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9289).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Sociopsychological barriers to peacemaking and overcoming them: A review of new psychological interventions.

Hameiri, B. & Halperin, E., 2015, The social psychology of intractable conflict: Celebrating the legacy of Daniel Bar-Tal,. Halperin, E. & Sharvit, K. (eds.). Cham, Switzerland: Springer International Publishing AG, Vol. 1. p. 173-187 15 p. (Peace psychology book series.; vol. 27).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

2014

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge

Brownstein, C. A., Beggs, A. H., Homer, N., Merriman, B., Yu, T. W., Flannery, K. C., DeChene, E. T., Towne, M. C., Savage, S. K., Price, E. N., Holm, I. A., Luquette, L. J., Lyon, E., Majzoub, J., Neupert, P., McCallie, D., Szolovits, P., Willard, H. F., Mendelsohn, N. J. & Temme, R. & 178 others, Finkel, R. S., Yum, S. W., Medne, L., Sunyaev, S. R., Adzhubey, I., Cassa, C. A., De Bakker, P. I. W., Duzkale, H., Dworzyński, P., Fairbrother, W., Francioli, L., Funke, B. H., Giovanni, M. A., Handsaker, R. E., Lage, K., Lebo, M. S., Lek, M., Leshchiner, I., MacArthur, D. G., McLaughlin, H. M., Murray, M. F., Pers, T. H., Polak, P. P., Raychaudhuri, S., Rehm, H. L., Soemedi, R., Stitziel, N. O., Vestecka, S., Supper, J., Gugenmus, C., Klocke, B., Hahn, A., Schubach, M., Menzel, M., Biskup, S., Freisinger, P., Deng, M., Braun, M., Perner, S., Smith, R. J. H., Andorf, J. L., Huang, J., Ryckman, K., Sheffield, V. C., Stone, E. M., Bair, T., Ann Black-Ziegelbein, E., Braun, T. A., Darbro, B., DeLuca, A. P., Kolbe, D. L., Scheetz, T. E., Shearer, A. E., Sompallae, R., Wang, K., Bassuk, A. G., Edens, E., Mathews, K., Moore, S. A., Shchelochkov, O. A., Trapane, P., Bossler, A., Campbell, C. A., Heusel, J. W., Kwitek, A., Maga, T., Panzer, K., Wassink, T., Van Daele, D., Azaiez, H., Booth, K., Meyer, N., Segal, M. M., Williams, M. S., Tromp, G., White, P., Corsmeier, D., Fitzgerald-Butt, S., Herman, G., Lamb-Thrush, D., McBride, K. L., Newsom, D., Pierson, C. R., Rakowsky, A. T., Maver, A., Lovrečić, L., Palandačić, A., Peterlin, B., Torkamani, A., Wedell, A., Huss, M., Alexeyenko, A., Lindvall, J. M., Magnusson, M., Nilsson, D., Stranneheim, H., Taylan, F., Gilissen, C., Hoischen, A., Van Bon, B., Yntema, H., Nelen, M., Zhang, W., Sager, J., Zhang, L., Blair, K., Kural, D., Cariaso, M., Lennon, G. G., Javed, A., Agrawal, S., Ng, P. C., Sandhu, K. S., Krishna, S., Veeramachaneni, V., Isakov, O., Halperin, E., Friedman, E., Shomron, N., Glusman, G., Roach, J. C., Caballero, J., Cox, H. C., Mauldin, D., Ament, S. A., Rowen, L., Richards, D. R., Anthony San Lucas, F., Gonzalez-Garay, M. L., Thomas Caskey, C., Bai, Y., Huang, Y., Fang, F., Zhang, Y., Wang, Z., Barrera, J., Garcia-Lobo, J. M., González-Lamuño, D., Llorca, J., Rodriguez, M. C., Varela, I., Reese, M. G., De La Vega, F. M., Kiruluta, E., Cargill, M., Hart, R. K., Sorenson, J. M., Lyon, G. J., Stevenson, D. A., Bray, B. E., Moore, B. M., Eilbeck, K., Yandell, M., Zhao, H., Hou, L., Chen, X., Yan, X., Chen, M., Li, C., Yang, C., Gunel, M., Li, P., Kong, Y., Alexander, A. C., Albertyn, Z. I., Boycott, K. M., Bulman, D. E., Gordon, P. M. K., Micheil Innes, A., Knoppers, B. M., Majewski, J., Marshall, C. R., Parboosingh, J. S., Sawyer, S. L., Samuels, M. E., Schwartzentruber, J., Kohane, I. S. & Margulies, D. M., 2014, In: Genome Biology. 15, 3, 18 p., R53.

Research output: Contribution to journal › Article › peer-review

Open Access

91 Scopus citations

EPIQ - Efficient detection of SNP-SNP epistatic interactions for quantitative traits

Arkin, Y., Rahmani, E., Kleber, M. E., Laaksonen, R., März, W. & Halperin, E., 15 Jun 2014, In: Bioinformatics. 30, 12, p. I19-I25

Research output: Contribution to journal › Article › peer-review

Open Access

13 Scopus citations

Fast lossless compression via cascading Bloom filters

Rozov, R., Shamir, R. & Halperin, E., 10 Sep 2014, In: BMC Bioinformatics. 15, S7.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Genotyping common and rare variation using overlapping pool sequencing

He, D., Zaitlen, N., Pasaniuc, B., Eskin, E. & Halperin, E., 1 Jan 2014, Bioinformatics: The Impact of Accurate Quantification on Proteomic and Genetic Analysis and Research. Apple Academic Press, p. 217-234 18 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE)

Shem-Tov, D. & Halperin, E., Jun 2014, In: PLoS Computational Biology. 10, 6, e1003610.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences

Colonna, V., Ayub, Q., Chen, Y., Pagani, L., Luisi, P., Pybus, M., Garrison, E., Xue, Y., Tyler-Smith, C., Abecasis, G. R., Auton, A., Brooks, L. D., Depristo, M. A., Durbin, R. M., Handsaker, R. E., Kang, H. M., Marth, G. T., McVean, G. A., Altshuler, D. M. & Bentley, D. R. & 364 others, Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Li, Z., Liu, X., Lu, Y., Ma, X., Su, Z., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Zhou, Y., Gupta, N., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Fulton, R., Weinstock, G. M., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Coin, L. J., Fang, L., Li, Q., Lin, H., Liu, B., Luo, R., Qin, N., Shao, H., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Ward, A. N., Wu, J., Zhang, M., Griffin, L., Hsieh, C. H., Mills, R. E., Shi, X., von Grotthuss, M., Zhang, C., Daly, M. J., Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Kim, K. C., Rausch, T., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Cheetham, R., Cox, T., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Batzer, M. A., Konkel, M. K., Walker, J. A., Macarthur, D. G., Lek, M., Herwig, R., Shriver, M. D., Bustamante, C. D., Byrnes, J. K., De La Vega, F. M., Gravel, S., Kenny, E. E., Kidd, J. M., Lacroute, P., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Bafna, V., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. P., Anderson, P., Angius, A., Bigham, A., Blackwell, T., Busonero, F., Cucca, F., Fuchsberger, C., Jones, C., Lyons, R., Maschio, A., Porcu, E., Reinier, F., Sanna, S., Schlessinger, D., Sidore, C., Tan, A., Trost, M. K., Awadalla, P., Hodgkinson, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Ko, A., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Dooling, D., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Coffey, A. J., Huang, N., Jostins, L., Li, H., Scally, A., Walter, K., Zhang, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Habegger, L., Harmanci, A. O., Jin, M., Khurana, E., Mu, X. J., Sisu, C., Degenhardt, J., Stütz, A. M., Church, D., Michaelson, J. J., Blackburne, B., Lindsay, S. J., Ning, Z., Balasubramanian, S., Frankish, A., Harrow, J., Balasubramanian, S., Kalra, D., Hale, W., Fowler, G., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Vaughan, B., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'sullivan, C., Ostapchuk, Y., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Gharani, N., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Reich, D., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Toji, L. H., Via, M., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Ming, C. Z., Yang, G., You, C. J., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Duncanson, A., Dunn, M., Guyer, M. S. & Peterson, J. L., 30 Jun 2014, In: Genome Biology. 15, 6, R88.

Research output: Contribution to journal › Article › peer-review

Open Access

59 Scopus citations

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Delaneau, O., Marchini, J., McVeanh, G. A., Donnelly, P., Lunter, G., Myers, S., Gupta-Hinch, A., Iqbal, Z., Mathieson, I., Rimmer, A., Xifara, D. K., Kerasidou, A., Churchhouse, C., Altshuler, D. M., Gabriel, S. B., Lander, E. S., Gupta, N., Daly, M. J., DePristo, M. A. & Banks, E. & 362 others, Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Li, H., Reich, D., Durbin, R. M., Hurles, M. E., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Ayub, Q., Chen, Y., Coffey, A. J., Colonna, V., Huang, N., Jostins, L., Scally, A., Walter, K., Xue, Y., Zhang, Y., Blackburne, B., Lindsay, S. J., Ning, Z., Frankish, A., Harrow, J., Chris, T. S., Abecasis, G. R., Kang, H. M., Anderson, P., Blackwell, T., Busonero, F., Fuchsberger, C., Jun, G., Maschio, A., Porcu, E., Sidore, C., Tan, A., Trost, M. K., Bentley, D. R., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., Murray, L., Shaw, R., Chakravarti, A., Clark, A. G., Keinan, A., Rodriguez-Flores, J. L., De LaVega, F. M., Degenhardt, J., Eichler, E. E., Flicek, P., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R. S., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Gibbs, R. A., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Fowler, G., Hale, W., Kalra, D., Green, E. D., Knoppers, B. M., Korbel, J. O., Rausch, T., Sttz, A. M., Lee, C., Griffin, L., Hsieh, C. H., Mills, R. E., Von Grotthuss, M., Zhang, C., Shi, X., Lehrach, H., Sudbrak, R., Amstislavskiy, V. S., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Herwig, S. R., Mardis, E. R., Wilson, R. K., Fulton, L., Fulton, R., Weinstock, G. M., Chinwalla, A., Ding, L., Dooling, D., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Marth, G. T., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Ward, A. N., Wu, J., Zhang, M., Nickerson, D. A., Alkan, C., Hormozdiari, F., Ko, A., Sudmant, P. H., Schmidt, J. P., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Sherry, S. T., Xiao, C., Church, D., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Wang, J., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Liu, X., Lu, Y., Ma, X., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Lachlan, H., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Shao, H., Wang, B., Xie, Y., Ye, C., Yu, C., Zheng, H., Zhu, H., Cai, H., Cao, H., Su, Y., Tian, Z., Yang, H., Yang, L., Zhu, J., Cai, Z., Wang, J., Albrecht, M. W., Borodina, T. A., Auton, A., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Kim, K. C., Gottipati, S., Jones, D., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Kahn, S., Ye, K., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Shriver, M. D., Bustamante, C. D., Gravel, S., Kenny, E. E., Kidd, J. M., Lacroute, P., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Henn, B., Sandoval, K., Byrnes, J. K., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Homer, N., Squire, K., Sebat, J., Bafna, V., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Liu, X., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. P., Angius, A., Cucca, F., Sanna, S., Bigham, A., Jones, C., Reinier, F., Li, Y., Lyons, R., Schlessinger, D., Awadalla, P., Hodgkinson, A., Oleksyk, T. K., Martinez-Cruzado, J. C., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Hajirasouliha, I., Chen, K., Albers, C. A., Gerstein, M. B., Abyzov, A., Chen, J., Fu, Y., Habegger, L., Harmanci, A. O., Mu, X. J., Sisu, C., Balasubramanian, S., Jin, M., Khurana, E., Clarke, D., Michaelson, J. J., OSullivan, C., Barnes, K. C., Gharani, N., Toji, L. H., Gerry, N., Kaye, J. S., Kent, A., Mathias, R., Ossorio, P. N., Parker, M., Rotimi, C. N., Royal, C. D., Tishkoff, S., Via, M., Bodmer, W., Bedoya, G., Yang, G., You, C. J., Garcia-Montero, A., Orfao, A., Dutil, J., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Guyer, M. S., Peterson, J. L., Duncanson, A., Dunn, M. & Peltonen, L., 13 Jun 2014, In: Nature Communications. 5, 3934.

Research output: Contribution to journal › Article › peer-review

Open Access

287 Scopus citations

Relation of genetic profile and novel circulating biomarkers with coronary plaque phenotype as determined by intravascular ultrasound: Rationale and design of the ATHEROREMO-IVUS study

De Boer, S. P. M., Cheng, J. M., Garcia-Garcia, H. M., Oemrawsingh, R. M., Van Geuns, R. J., Regar, E., Zijlstra, F., Laaksonen, R., Halperin, E., Kleber, M. E., Koenig, W., Boersma, E. & Serruys, P. W., 1 Dec 2014, In: EuroIntervention. 10, 8, p. 953-960 8 p.

Research output: Contribution to journal › Article › peer-review

24 Scopus citations

2013

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation

Pasaniuc, B., Sankararaman, S., Torgerson, D. G., Gignoux, C., Zaitlen, N., Eng, C., Rodriguez-Cintron, W., Chapela, R., Ford, J. G., Avila, P. C., Rodriguez-Santana, J., Chen, G. K., Le Marchand, L., Henderson, B., Reich, D., Haiman, C. A., Gonzàlez Burchard, E. & Halperin, E., 1 Jun 2013, In: Bioinformatics. 29, 11, p. 1407-1415 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

31 Scopus citations

CNVeM: Copy number variation detection using uncertainty of read mapping

Wang, Z., Hormozdiari, F., Yang, W. Y., Halperin, E. & Eskin, E., 1 Mar 2013, In: Journal of Computational Biology. 20, 3, p. 224-236 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

eALPS: Estimating abundance levels in pooled sequencing using available genotyping data

Eskin, I., Hormozdiari, F., Conde, L., Riby, J., Skibola, C., Eskin, E. & Halperin, E., 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 32-44 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

2 Scopus citations

EALPS: Estimating abundance levels in pooled sequencing using available genotyping data

Eskin, I., Hormozdiari, F., Conde, L., Riby, J., Skibola, C. F., Eskin, E. & Halperin, E., 1 Nov 2013, In: Journal of Computational Biology. 20, 11, p. 861-877 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Enhanced localization of genetic samples through linkage-disequilibrium correction

Baran, Y., Quintela, I., Carracedo, Á., Pasaniuc, B. & Halperin, E., 6 Jun 2013, In: American Journal of Human Genetics. 92, 6, p. 882-894 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Identifying personal genomes by surname inference

Gymrek, M., McGuire, A. L., Golan, D., Halperin, E. & Erlich, Y., 18 Jan 2013, In: Science. 339, 6117, p. 321-324 4 p.

Research output: Contribution to journal › Article › peer-review

828 Scopus citations

Integrative annotation of variants from 1092 humans: Application to cancer genomics

1000 Genomes Project Consortium, 4 Oct 2013, In: Science. 342, 6154, 1235587.

Research output: Contribution to journal › Article › peer-review

Open Access

286 Scopus citations

Learning natural selection from the site frequency spectrum

Ronen, R., Udpa, N., Halperin, E. & Bafna, V., 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 230-233 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Open Access

Learning natural selection from the site frequency spectrum

Ronen, R., Udpa, N., Halperin, E. & Bafna, V., 2013, In: Genetics. 195, 1, p. 181-193 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

79 Scopus citations

No evidence from genome-wide data of a khazar origin for the ashkenazi jews

Behar, D. M., Metspalu, M., Baran, Y., Kopelman, N. M., Yunusbayev, B., Gladstein, A., Tzur, S., Sahakyan, H., Bahmanimehr, A., Yepiskoposyan, L., Tambets, K., Khusnutdinova, E. K., Kushniarevich, A., Balanovsky, O., Balanovsky, E., Kovacevic, L., Marjanovic, D., Mihailov, E., Kouvatsi, A. & Triantaphyllidis, C. & 10 others, King, R. J., Semino, O., Torroni, A., Hammer, M. F., Metspalu, E., Skorecki, K., Rosset, S., Halperin, E., Villems, R. & Rosenberg, N. A., Dec 2013, In: Human Biology. 85, 6, p. 859-900 42 p.

Research output: Contribution to journal › Article › peer-review

Open Access

61 Scopus citations

Probabilistic inference of viral quasispecies subject to recombination

Töpfer, A., Zagordi, O., Prabhakaran, S., Roth, V., Halperin, E. & Beerenwinkel, N., 1 Feb 2013, In: Journal of Computational Biology. 20, 2, p. 113-123 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

92 Scopus citations

Rare variant association testing under low-coverage sequencing

Navon, O., Sul, J. H., Han, B., Conde, L., Bracci, P. M., Riby, J., Skibola, C. F., Eskin, E. & Halperin, E., Jul 2013, In: Genetics. 194, 3, p. 769-779 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

2012

A model-based approach for analysis of spatial structure in genetic data

Yang, W. Y., Novembre, J., Eskin, E. & Halperin, E., Jun 2012, In: Nature Genetics. 44, 6, p. 725-731 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

113 Scopus citations

Eran Halperin

Research output

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