David Horn

Research output

Research output per year 1962 1965 1966 1970 1973 1978 1979 1996 1997 1998 1999 2001 2002 2003 2004 2005 2007 2022

• 166 Article
• 17 Conference contribution
• 6 Conference article
• 4 Paper
• 10 More
  • 4 Review article
  • 2 Chapter
  • 2 Comment/debate
  • 1 Book
  • 1 Letter

Research output per year

Research output per year

Search results

• 2022

  Deep Learning Study of an Electromagnetic Calorimeter

  Sela, E., Huang, S. & Horn, D., Apr 2022, In: Algorithms. 15, 4, 115.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Calorimeter 100%
  • Detector 68%
  • Learning 52%
  • Network Architecture 21%
  • Output 10%
• 2021

  Inter-chromosomal k-mer distances

  Kafri, A., Chor, B. & Horn, D., Dec 2021, In: BMC Genomics. 22, 1, 644.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Chromosomes 100%
  • Synteny 90%
  • Eukaryota 65%
  • Bacterial Chromosomes 31%
  • Bacteria 28%

• Mutation–selection balance and compensatory mechanisms in tumour evolution

  Persi, E., Wolf, Y. I., Horn, D., Ruppin, E., Demichelis, F., Gatenby, R. A., Gillies, R. J. & Koonin, E. V., Apr 2021, In: Nature Reviews Genetics. 22, 4, p. 251-262 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Epigenomics 100%
  • Physiological Adaptation 74%
  • Neoplasms 73%
  • Point Mutation 55%
  • Early Detection of Cancer 54%

• Publisher Correction: Mutation–selection balance and compensatory mechanisms in tumour evolution (Nature Reviews Genetics, (2021), 22, 4, (251-262), 10.1038/s41576-020-00299-4)

  Persi, E., Wolf, Y. I., Horn, D., Ruppin, E., Demichelis, F., Gatenby, R. A., Gillies, R. J. & Koonin, E. V., Apr 2021, In: Nature Reviews Genetics. 22, 4, p. 263 1 p.

  Research output: Contribution to journal › Comment/debate

  Open Access

  • Population Density 100%
  • Neoplasms 27%
• 2019

  Proteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues

  Persi, E., Prandi, D., Wolf, Y. I., Pozniak, Y., Barnabas, G. D., Levanon, K., Barshack, I., Barbieri, C., Gasperini, P., Beltran, H., Faltas, B. M., Rubin, M. A., Geiger, T., Koonin, E. V., Demichelis, F. & Horn, D., 20 Aug 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 34, p. 16987-16996 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Proteomics 100%
  • Neoplasms 35%
  • Genome 18%
  • Nucleic Acid Repetitive Sequences 16%
  • Genomic Instability 14%
• 2018

  The Weight-Shape decomposition of density estimates: A framework for clustering and image analysis algorithms

  Deutsch, L. & Horn, D., Sep 2018, In: Pattern Recognition. 81, p. 190-199 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Image analysis 100%
  • Decomposition 75%
  • Entropy 58%
  • Terminology 38%
  • Probability density function 33%
• 2016

  Inversion symmetry of DNA k-mer counts: Validity and deviations

  Shporer, S., Chor, B., Rosset, S. & Horn, D., 31 Aug 2016, In: BMC Genomics. 17, 1, 696.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Chromosomes 100%
  • Human Chromosomes 95%
  • DNA 70%
  • Nucleotides 68%
  • Poisson Distribution 63%
• 2015

  Quarks in the Bootstrap era

  Horn, D., 1 Jan 2015, 50 Years of Quarks. World Scientific Publishing Co., p. 105-113 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Bootstrap 100%
  • quark models 78%
  • Duality 72%
  • hadrons 59%
  • quarks 53%
• 2014

  Hierarchical partitioning of metazoan protein conservation profiles provides new functional insights

  Witztum, J., Persi, E., Horn, D., Pasmanik-Chor, M. & Chor, B., 4 Mar 2014, In: PLoS ONE. 9, 3, e90282.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Proteins 100%
  • Gene Ontology 66%
  • Diptera 42%
  • Gorilla gorilla 28%
  • Proteome 20%

• Quarks in the bootstrap era

  Horn, D., 20 Dec 2014, In: International Journal of Modern Physics A. 29, 31, 1430075.

  Research output: Contribution to journal › Review article › peer-review

  • quark models 100%
  • hadrons 75%
  • quarks 68%
  • Regge poles 40%
  • trajectories 23%
• 2013

  Systematic Analysis of Compositional Order of Proteins Reveals New Characteristics of Biological Functions and a Universal Correlate of Macroevolution

  Persi, E. & Horn, D., Nov 2013, In: PLoS Computational Biology. 9, 11, e1003346.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Correlate 100%
  • Protein 65%
  • Amino Acids 59%
  • amino acid 57%
  • Proteins 57%

• The COMBREX Project: Design, Methodology, and Initial Results

  Anton, B. P., Chang, Y. C., Brown, P., Choi, H. P., Faller, L. L., Guleria, J., Hu, Z., Klitgord, N., Levy-Moonshine, A., Maksad, A., Mazumdar, V., McGettrick, M., Osmani, L., Pokrzywa, R., Rachlin, J., Swaminathan, R., Allen, B., Housman, G., Monahan, C., Rochussen, K., & 54 othersTao, K., Bhagwat, A. S., Brenner, S. E., Columbus, L., de Crécy-Lagard, V., Ferguson, D., Fomenkov, A., Gadda, G., Morgan, R. D., Osterman, A. L., Rodionov, D. A., Rodionova, I. A., Rudd, K. E., Söll, D., Spain, J., Xu, S. Y., Bateman, A., Blumenthal, R. M., Bollinger, J. M., Chang, W. S., Ferrer, M., Friedberg, I., Galperin, M. Y., Gobeill, J., Haft, D., Hunt, J., Karp, P., Klimke, W., Krebs, C., Macelis, D., Madupu, R., Martin, M. J., Miller, J. H., O'Donovan, C., Palsson, B., Ruch, P., Setterdahl, A., Sutton, G., Tate, J., Yakunin, A., Tchigvintsev, D., Plata, G., Hu, J., Greiner, R., Horn, D., Sjölander, K., Salzberg, S. L., Vitkup, D., Letovsky, S., Segrè, D., DeLisi, C., Roberts, R. J., Steffen, M. & Kasif, S., Aug 2013, In: PLoS Biology. 11, 8, e1001638.

  Research output: Contribution to journal › Article › peer-review

  Open Access
• 2012

  Large ensemble averaging

  Horn, D., Naftaly, U. & Intrator, N., 2012, Neural Networks: Tricks of the Trade. Springer Verlag, p. 131-137 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7700 LECTURE NO).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Ensemble 100%
  • Averaging 95%
  • Predictors 46%
  • Stopping Criterion 32%
  • Optimal Stopping 31%

• Peptide markers of aminoacyl tRNA synthetases facilitate taxa counting in metagenomic data

  Persi, E., Weingart, U., Freilich, S. & Horn, D., 10 Feb 2012, In: BMC Genomics. 13, 1, 65.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Amino Acyl-tRNA Synthetases 100%
  • Metagenomics 89%
  • Peptides 46%
  • 16S Ribosomal RNA 21%
  • Heuristics 13%
• 2011

  Common peptides study of aminoacyl-tRNA synthetases

  Gottlieb, A., Frenkel-Morgenstern, M., Safro, M. & Horn, D., 2011, In: PLoS ONE. 6, 5, e20361.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • aminoacyl tRNA ligases 100%
  • Amino Acyl-tRNA Synthetases 98%
  • peptides 48%
  • Peptides 45%
  • Peptide 41%
• 2010

  Deriving enzymatic and taxonomic signatures of metagenomes from short read data

  Weingart, U., Persi, E., Gophna, U. & Horn, D., 22 Jul 2010, In: BMC Bioinformatics. 11, 390.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Metagenome 100%
  • Peptides 98%
  • Signature 66%
  • Metagenomics 43%
  • Enzymes 41%

• UFFizi: A generic platform for ranking informative features

  Gottlieb, A., Varshavsky, R., Linial, M. & Horn, D., 1 Jun 2010, In: BMC Bioinformatics. 11, 300.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Ranking 100%
  • Filtering 97%
  • Filtration 85%
  • Entropy 58%
  • Datasets 58%
• 2009

  Common peptides shed light on evolution of Olfactory Receptors

  Gottlieb, A., Olender, T., Lancet, D. & Horn, D., 2009, In: BMC Evolutionary Biology. 9, 1, 91.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Odorant Receptors 100%
  • olfactory receptors 93%
  • peptide 73%
  • peptides 49%
  • Peptides 45%

• Data mining of enzymes using specific peptides

  Weingart, U., Lavi, Y. & Horn, D., 24 Dec 2009, In: BMC Bioinformatics. 10, 446.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Peptides 100%
  • Data Mining 85%
  • Enzymes 84%
  • Mining 80%
  • Data mining 58%

• Dynamic quantum clustering: A method for visual exploration of structures in data

  Weinstein, M. & Horn, D., 17 Dec 2009, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 80, 6, 066117.

  Research output: Contribution to journal › Article › peer-review

  • Quantum Dynamics 100%
  • Vision 72%
  • Clustering 67%
  • Cluster Analysis 63%
  • formalism 50%

• Genomic DNA k-mer spectra: Models and modalities

  Chor, B., Horn, D., Goldman, N., Levy, Y. & Massingham, T., 8 Oct 2009, In: Genome Biology. 10, 10, 108.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • genomics 100%
  • DNA 82%
  • Genome 67%
  • Entamoeba histolytica 65%
  • Archaea 60%
• 2008

  Biological roles of specific peptides in enzymes

  Meroz, Y. & Horn, D., 1 Aug 2008, In: Proteins: Structure, Function and Genetics. 72, 2, p. 606-612 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Biological Role 100%
  • Peptides 51%
  • Peptide 46%
  • Enzymes 44%
  • Mutagen 9%

• Global considerations in hierarchical clustering reveal meaningful patterns in data

  Varshavsky, R., Horn, D. & Linial, M., 21 May 2008, In: PLoS ONE. 3, 5, e2247.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cluster Analysis 100%
  • Unsupervised Machine Learning 20%
  • Proteins 12%
  • Ion Channels 11%
  • Gene Expression 6%

• Syntactic structures in languages and biology

  Horn, D., Aug 2008, In: Cognitive Processing. 9, 3, p. 153-158 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Syntactics 100%
  • biology 82%
  • Language 77%
  • Distillation 73%
  • Linguistics 54%
• 2007

  Clustering algorithms optimizer: A framework for large datasets

  Varshavsky, R., Horn, D. & Linial, M., 2007, Bioinformatics Research and Applications - Third International Symposium, ISBRA 2007, Proceedings. Springer Verlag, p. 85-96 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4463 LNBI).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Clustering Algorithm 100%
  • Large Data Sets 91%
  • Large dataset 82%
  • Clustering algorithms 68%
  • Dimension Reduction 57%

• Functional representation of enzymes by specific peptides

  Kunik, V., Meroz, Y., Solan, Z., Sandbank, B., Ruppin, E., Weingart, U. & Horn, D., Aug 2007, In: PLoS Computational Biology. 3, 8, p. 1623-1632 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Peptides 100%
  • Enzymes 84%
  • peptide 72%
  • enzyme 56%
  • peptides 48%

• Nucleotide variation of regulatory motifs may lead to distinct expression patterns

  Segal, L., Lapidot, M., Solan, Z., Ruppin, E., Pilpel, Y. & Horn, D., 1 Jul 2007, In: Bioinformatics. 23, 13, p. i440-i449

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Transcription factors 100%
  • Nucleotides 86%
  • Genes 66%
  • Transcription Factor 65%
  • Binding sites 64%

• Unsupervised feature selection under perturbations: Meeting the challenges of biological data

  Varshavsky, R., Gottlieb, A., Horn, D. & Linial, M., Dec 2007, In: Bioinformatics. 23, 24, p. 3343-3349 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Feature Selection 100%
  • Biological Property 72%
  • Filtration 64%
  • Feature extraction 57%
  • Perturbation 51%

• Viral photosynthetic reaction center genes and transcripts in the marine environment

  Sharon, I., Tzahor, S., Williamson, S., Shmoish, M., Man-Aharonovich, D., Rusch, D. B., Yooseph, S., Zeidner, G., Golden, S. S., MacKey, S. R., Adir, N., Weingart, U., Horn, D., Venter, J. C., Mandel-Gutfreund, Y. & Béjà, O., Oct 2007, In: ISME Journal. 1, 6, p. 492-501 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Photosynthetic Reaction Center Complex Proteins 100%
  • photosynthetic reaction centers 81%
  • marine environment 62%
  • Bacteriophages 53%
  • phages 42%
• 2006

  Novel unsupervised feature filtering of biological data

  Varshavsky, R., Gottlieb, A., Linial, M. & Horn, D., 15 Jul 2006, In: Bioinformatics. 22, 14, p. e507-e513

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Entropy 100%
  • Filtering 83%
  • Biological Property 81%
  • Filtration 72%
  • Gene 35%

• Spatiotemporal clustering of synchronized bursting events in neuronal networks

  Barkan, U. & Horn, D., May 2006, In: Neurocomputing. 69, 10-12, p. 1108-1111 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Singular value decomposition 100%
  • Neurons 89%
  • Cluster Analysis 87%
  • Display devices 74%
  • Data Analysis 36%
• 2005

  Can dynamic neural filters produce pseudo-random sequences?

  Elyada, Y. M. & Horn, D., 2005, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). p. 211-216 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3696 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Pseudorandom Sequence 100%
  • Filter 66%
  • Recurrent Networks 59%
  • Random Maps 51%
  • Battery 51%

• COMPACT: A Comparative Package for Clustering Assessment

  Varshavsky, R., Linial, M. & Horn, D., 2005, Parallel and Distributed Processing and Applications - ISPA 2005 Workshops - ISPA 2005 International Workshops, AEPP, ASTD, BIOS, GCIC, IADS, MASN, SGCA, and WISA, Proceedings. p. 159-167 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3759 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Clustering 100%
  • Clustering Methods 94%
  • Gene Expression 88%
  • Gene expression 76%
  • Cluster Algorithm 60%

• In vitro neuronal networks: Evidence for synaptic plasticity

  Elhalal, A. & Horn, D., Jun 2005, In: Neurocomputing. 65-66, SPEC. ISS., p. 31-37 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Singular value decomposition 100%
  • Neuronal Plasticity 93%
  • Plasticity 90%
  • Principal Component Analysis 69%
  • Principal component analysis 45%

• Memory capacity of balanced networks

  Aviel, Y., Horn, D. & Abeles, M., Mar 2005, In: Neural Computation. 17, 3, p. 691-713 23 p.

  Research output: Contribution to journal › Article › peer-review

  • Memory 100%
  • Memory Model 67%
  • Cells 64%
  • Scaling 27%
  • Connectivity 25%

• Motif extraction and protein classification

  Kunik, V., Solan, Z., Edelman, S., Ruppin, E. & Horn, D., 2005, Proceedings - 2005 IEEE Computational SystemsBioinformatics Conference, CSB 2005. p. 80-85 6 p. 1498009. (Proceedings - 2005 IEEE Computational Systems Bioinformatics Conference, CSB 2005; vol. 2005).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Amino Acid Motifs 100%
  • Proteins 71%
  • Enzymes 67%
  • Oxidoreductases 29%
  • Amino Acid Sequence 24%

• The inertial-DNF model: Spatiotemporal coding on two time scales

  Kliper, O., Horn, D. & Quenet, B., Jun 2005, In: Neurocomputing. 65-66, SPEC. ISS., p. 543-548 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Odors 100%
  • Grasshoppers 95%
  • Neurons 74%
  • Odorants 71%

• Unsupervised learning of natural languages

  Solan, Z., Horn, D., Ruppin, E. & Edelman, S., 16 Aug 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 33, p. 11629-11634 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Language 100%
  • Learning 92%
  • Computational Biology 79%
  • Distillation 62%
  • Psychological Generalization 55%
• 2004

  Analysis of spatiotemporal patterns in a model of olfaction

  Kliper, O., Horn, D., Quenet, B. & Dror, G., Jun 2004, In: Neurocomputing. 58-60, p. 1027-1032 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Spatio-Temporal Analysis 100%
  • Odors 85%
  • Smell 82%
  • Odorants 73%
  • Grasshoppers 32%

• Dynamic proximity of spatio-temporal sequences

  Horn, D., Dror, G. & Quenet, B., Sep 2004, In: IEEE Transactions on Neural Networks. 15, 5, p. 1002-1008 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Support Vector Machine 100%
  • Neurons 75%
  • Support vector machines 43%
  • Weights and Measures 34%
  • Noise 25%

• Modeling of synchronized bursting events: The importance of inhomogeneity

  Persi, E., Horn, D., Volman, V., Segev, R. & Ben-Jacob, E., Dec 2004, In: Neural Computation. 16, 12, p. 2577-2595 19 p.

  Research output: Contribution to journal › Review article › peer-review

  • Synapses 100%
  • Modeling 92%
  • Neurons 67%
  • Network Model 51%
  • In Vitro Techniques 47%

• Neural modeling of synchronized bursting events

  Persi, E., Horn, D., Segev, R., Ben-Jacob, E. & Volman, V., Jun 2004, In: Neurocomputing. 58-60, p. 179-184 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Neurons 100%
  • In Vitro Techniques 71%

• Synfire waves in small balanced networks

  Aviel, Y., Horn, D. & Abeles, M., Jun 2004, In: Neurocomputing. 58-60, p. 123-127 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Wave propagation 100%
  • Population 37%

• The doubly balanced network of spiking neurons: A memory model with high capacity

  Aviel, Y., Horn, D. & Abeles, M., 2004, Advances in Neural Information Processing Systems 16 - Proceedings of the 2003 Conference, NIPS 2003. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Neurons 100%
  • Data storage equipment 65%

• Unsupervised context sensitive language acquisition from a large corpus

  Solan, Z., Horn, D., Ruppin, E. & Edelman, S., 2004, Advances in Neural Information Processing Systems 16 - Proceedings of the 2003 Conference, NIPS 2003. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Context sensitive languages 100%
  • Linguistics 36%
  • Equivalence classes 26%
  • Students 14%

• Unsupervised context sensitive language acquisition from large, untagged corpora

  Solan, Z., Ruppin, E., Horn, D. & Edelman, S., 2004, p. 61-64. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Context sensitive languages 100%
  • Distillation 60%
  • Model structures 40%
  • Data structures 15%

• Using a neural network approach for muon reconstruction and triggering

  Etzion, E., Abramowicz, H., Benhammou, Y., Dror, G., Horn, D., Levinson, L. & Livneh, R., 21 Nov 2004, In: Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 534, 1-2, p. 222-227 6 p.

  Research output: Contribution to journal › Conference article › peer-review

  • muons 100%
  • actuators 89%
  • Hadrons 86%
  • Colliding beam accelerators 77%
  • Neural networks 66%
• 2003

  Automatic acquisition and efficient representation of syntactic structures

  Solan, Z., Ruppin, E., Horn, D. & Edelman, S., 2003, Advances in Neural Information Processing Systems 15 - Proceedings of the 2002 Conference, NIPS 2002. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Syntactics 100%

• Modeling neural spatiotemporal behavior

  Horn, D., Quenet, B., Dror, G. & Kliper, O., Jun 2003, In: Neurocomputing. 52-54, p. 799-804 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Grasshoppers 100%
  • Neurons 86%
  • Motivation 56%
  • Observation 50%

• Novel clustering algorithm for microarray expression data in a truncated SVD space

  Horn, D. & Axel, I., 12 Jun 2003, In: Bioinformatics. 19, 9, p. 1110-1115 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Clustering Algorithm 100%
  • Microarray 97%
  • Microarrays 86%
  • Singular value decomposition 77%
  • Genes 72%