David Horn

2025

Novel silicon and GaAs sensors for compact sampling calorimeters

Abramowicz, H., Soto, M. A., Benhammou, Y., Elad, M., Firlej, M., Fiutowski, T., Ghenescu, V., Grzelak, G., Horn, D., Huang, S., Idzik, M., Irles, A., Levy, A., Levy, I., Lohmann, W., Moroń, J., Neagu, A. T., Pietruch, D., Potlog, P. M. & Świentek, K. & 2 others, Żarnecki, A. F. & Zembaczyński, K., Jun 2025, In: European Physical Journal C. 85, 6, 684.

Research output: Contribution to journal › Article › peer-review

2024

Technical Design Report for the LUXE experiment

LUXE Collaboration, Oct 2024, In: European Physical Journal: Special Topics. 233, 10, p. 1709-1974 266 p.

Research output: Contribution to journal › Review article › peer-review

11 Scopus citations

2023

Evolution of language diversity: Why fitness counts

Solan, Z., Ruppin, E., Horn, D. & Edelman, S., 1 Jan 2023, Language Origins: Perspectives on evolution. Oxford University Press, p. 357-371 15 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

1 Scopus citations

2022

Deep Learning Study of an Electromagnetic Calorimeter

Sela, E., Huang, S. & Horn, D., Apr 2022, In: Algorithms. 15, 4, 115.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

2021

Inter-chromosomal k-mer distances

Kafri, A., Chor, B. & Horn, D., Dec 2021, In: BMC Genomics. 22, 1, 644.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Mutation–selection balance and compensatory mechanisms in tumour evolution

Persi, E., Wolf, Y. I., Horn, D., Ruppin, E., Demichelis, F., Gatenby, R. A., Gillies, R. J. & Koonin, E. V., Apr 2021, In: Nature Reviews Genetics. 22, 4, p. 251-262 12 p.

Research output: Contribution to journal › Article › peer-review

47 Scopus citations

Publisher Correction: Mutation–selection balance and compensatory mechanisms in tumour evolution (Nature Reviews Genetics, (2021), 22, 4, (251-262), 10.1038/s41576-020-00299-4)

Persi, E., Wolf, Y. I., Horn, D., Ruppin, E., Demichelis, F., Gatenby, R. A., Gillies, R. J. & Koonin, E. V., Apr 2021, In: Nature Reviews Genetics. 22, 4, p. 263 1 p.

Research output: Contribution to journal › Comment/debate

Open Access

2019

Novel Formulation of Parzen Data Analysis

Horn, D., 11 Mar 2019, Pattern Recognition. Zak, A. (ed.). Rijeka: IntechOpen

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Proteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues

Persi, E., Prandi, D., Wolf, Y. I., Pozniak, Y., Barnabas, G. D., Levanon, K., Barshack, I., Barbieri, C., Gasperini, P., Beltran, H., Faltas, B. M., Rubin, M. A., Geiger, T., Koonin, E. V., Demichelis, F. & Horn, D., 20 Aug 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 34, p. 16987-16996 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

2018

The Weight-Shape decomposition of density estimates: A framework for clustering and image analysis algorithms

Deutsch, L. & Horn, D., Sep 2018, In: Pattern Recognition. 81, p. 190-199 10 p.

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

2016

Inversion symmetry of DNA k-mer counts: Validity and deviations

Shporer, S., Chor, B., Rosset, S. & Horn, D., 31 Aug 2016, In: BMC Genomics. 17, 1, 696.

Research output: Contribution to journal › Article › peer-review

Open Access

19 Scopus citations

2015

Quarks in the Bootstrap era

Horn, D., 1 Jan 2015, 50 Years of Quarks. World Scientific Publishing Co., p. 105-113 9 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Taxa Counting Using Specific Peptides of Aminoacyl tRNA Synthetases

Horn, D., 2015, Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes: Basics, Methods, Databases and Tools. Nelson, K. E. (ed.). Boston, MA: Springer US, p. 651-653 3 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

2014

Hierarchical partitioning of metazoan protein conservation profiles provides new functional insights

Witztum, J., Persi, E., Horn, D., Pasmanik-Chor, M. & Chor, B., 4 Mar 2014, In: PLoS ONE. 9, 3, e90282.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Quarks in the bootstrap era

Horn, D., 20 Dec 2014, In: International Journal of Modern Physics A. 29, 31, 1430075.

Research output: Contribution to journal › Review article › peer-review

2013

Systematic Analysis of Compositional Order of Proteins Reveals New Characteristics of Biological Functions and a Universal Correlate of Macroevolution

Persi, E. & Horn, D., Nov 2013, In: PLoS Computational Biology. 9, 11, e1003346.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

The COMBREX Project: Design, Methodology, and Initial Results

Anton, B. P., Chang, Y. C., Brown, P., Choi, H. P., Faller, L. L., Guleria, J., Hu, Z., Klitgord, N., Levy-Moonshine, A., Maksad, A., Mazumdar, V., McGettrick, M., Osmani, L., Pokrzywa, R., Rachlin, J., Swaminathan, R., Allen, B., Housman, G., Monahan, C. & Rochussen, K. & 54 others, Tao, K., Bhagwat, A. S., Brenner, S. E., Columbus, L., de Crécy-Lagard, V., Ferguson, D., Fomenkov, A., Gadda, G., Morgan, R. D., Osterman, A. L., Rodionov, D. A., Rodionova, I. A., Rudd, K. E., Söll, D., Spain, J., Xu, S. Y., Bateman, A., Blumenthal, R. M., Bollinger, J. M., Chang, W. S., Ferrer, M., Friedberg, I., Galperin, M. Y., Gobeill, J., Haft, D., Hunt, J., Karp, P., Klimke, W., Krebs, C., Macelis, D., Madupu, R., Martin, M. J., Miller, J. H., O'Donovan, C., Palsson, B., Ruch, P., Setterdahl, A., Sutton, G., Tate, J., Yakunin, A., Tchigvintsev, D., Plata, G., Hu, J., Greiner, R., Horn, D., Sjölander, K., Salzberg, S. L., Vitkup, D., Letovsky, S., Segrè, D., DeLisi, C., Roberts, R. J., Steffen, M. & Kasif, S., Aug 2013, In: PLoS Biology. 11, 8, e1001638.

Research output: Contribution to journal › Article › peer-review

Open Access

45 Scopus citations

2012

Large ensemble averaging

Horn, D., Naftaly, U. & Intrator, N., 2012, Neural Networks: Tricks of the Trade. Springer Verlag, p. 131-137 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7700 LECTURE NO).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

2 Scopus citations

Peptide markers of aminoacyl tRNA synthetases facilitate taxa counting in metagenomic data

Persi, E., Weingart, U., Freilich, S. & Horn, D., 10 Feb 2012, In: BMC Genomics. 13, 1, 65.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

2011

Common peptides study of aminoacyl-tRNA synthetases

Gottlieb, A., Frenkel-Morgenstern, M., Safro, M. & Horn, D., 2011, In: PLoS ONE. 6, 5, e20361.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

2010

Deriving enzymatic and taxonomic signatures of metagenomes from short read data

Weingart, U., Persi, E., Gophna, U. & Horn, D., 22 Jul 2010, In: BMC Bioinformatics. 11, 390.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

UFFizi: A generic platform for ranking informative features

Gottlieb, A., Varshavsky, R., Linial, M. & Horn, D., 1 Jun 2010, In: BMC Bioinformatics. 11, 300.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

2009

Common peptides shed light on evolution of Olfactory Receptors

Gottlieb, A., Olender, T., Lancet, D. & Horn, D., 2009, In: BMC Evolutionary Biology. 9, 1, 91.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Data mining of enzymes using specific peptides

Weingart, U., Lavi, Y. & Horn, D., 24 Dec 2009, In: BMC Bioinformatics. 10, 446.

Research output: Contribution to journal › Article › peer-review

Open Access

10 Scopus citations

Dynamic quantum clustering: A method for visual exploration of structures in data

Weinstein, M. & Horn, D., 17 Dec 2009, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 80, 6, 066117.

Research output: Contribution to journal › Article › peer-review

Open Access

39 Scopus citations

Genomic DNA k-mer spectra: Models and modalities

Chor, B., Horn, D., Goldman, N., Levy, Y. & Massingham, T., 8 Oct 2009, In: Genome Biology. 10, 10, 108.

Research output: Contribution to journal › Article › peer-review

Open Access

191 Scopus citations

2008

Biological roles of specific peptides in enzymes

Meroz, Y. & Horn, D., 1 Aug 2008, In: Proteins: Structure, Function and Genetics. 72, 2, p. 606-612 7 p.

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Global considerations in hierarchical clustering reveal meaningful patterns in data

Varshavsky, R., Horn, D. & Linial, M., 21 May 2008, In: PLoS ONE. 3, 5, e2247.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

Syntactic structures in languages and biology

Horn, D., Aug 2008, In: Cognitive Processing. 9, 3, p. 153-158 6 p.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

2007

Clustering algorithms optimizer: A framework for large datasets

Varshavsky, R., Horn, D. & Linial, M., 2007, Bioinformatics Research and Applications - Third International Symposium, ISBRA 2007, Proceedings. Springer Verlag, p. 85-96 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4463 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

8 Scopus citations

Functional representation of enzymes by specific peptides

Kunik, V., Meroz, Y., Solan, Z., Sandbank, B., Ruppin, E., Weingart, U. & Horn, D., Aug 2007, In: PLoS Computational Biology. 3, 8, p. 1623-1632 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

Nucleotide variation of regulatory motifs may lead to distinct expression patterns

Segal, L., Lapidot, M., Solan, Z., Ruppin, E., Pilpel, Y. & Horn, D., 1 Jul 2007, In: Bioinformatics. 23, 13, p. i440-i449

Research output: Contribution to journal › Article › peer-review

Open Access

13 Scopus citations

Unsupervised feature selection under perturbations: Meeting the challenges of biological data

Varshavsky, R., Gottlieb, A., Horn, D. & Linial, M., Dec 2007, In: Bioinformatics. 23, 24, p. 3343-3349 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

22 Scopus citations

Viral photosynthetic reaction center genes and transcripts in the marine environment

Sharon, I., Tzahor, S., Williamson, S., Shmoish, M., Man-Aharonovich, D., Rusch, D. B., Yooseph, S., Zeidner, G., Golden, S. S., MacKey, S. R., Adir, N., Weingart, U., Horn, D., Venter, J. C., Mandel-Gutfreund, Y. & Béjà, O., Oct 2007, In: ISME Journal. 1, 6, p. 492-501 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

105 Scopus citations

2006

Novel unsupervised feature filtering of biological data

Varshavsky, R., Gottlieb, A., Linial, M. & Horn, D., 15 Jul 2006, In: Bioinformatics. 22, 14, p. e507-e513

Research output: Contribution to journal › Article › peer-review

Open Access

137 Scopus citations

Spatiotemporal clustering of synchronized bursting events in neuronal networks

Barkan, U. & Horn, D., May 2006, In: Neurocomputing. 69, 10-12, p. 1108-1111 4 p.

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

2005

Can dynamic neural filters produce pseudo-random sequences?

Elyada, Y. M. & Horn, D., 2005, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). p. 211-216 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3696 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

COMPACT: A Comparative Package for Clustering Assessment

Varshavsky, R., Linial, M. & Horn, D., 2005, Parallel and Distributed Processing and Applications - ISPA 2005 Workshops - ISPA 2005 International Workshops, AEPP, ASTD, BIOS, GCIC, IADS, MASN, SGCA, and WISA, Proceedings. p. 159-167 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3759 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

31 Scopus citations

In vitro neuronal networks: Evidence for synaptic plasticity

Elhalal, A. & Horn, D., Jun 2005, In: Neurocomputing. 65-66, SPEC. ISS., p. 31-37 7 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Memory capacity of balanced networks

Aviel, Y., Horn, D. & Abeles, M., Mar 2005, In: Neural Computation. 17, 3, p. 691-713 23 p.

Research output: Contribution to journal › Article › peer-review

26 Scopus citations

Motif extraction and protein classification

Kunik, V., Solan, Z., Edelman, S., Ruppin, E. & Horn, D., 2005, Proceedings - 2005 IEEE Computational SystemsBioinformatics Conference, CSB 2005. p. 80-85 6 p. 1498009. (Proceedings - 2005 IEEE Computational Systems Bioinformatics Conference, CSB 2005; vol. 2005).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

27 Scopus citations

The inertial-DNF model: Spatiotemporal coding on two time scales

Kliper, O., Horn, D. & Quenet, B., Jun 2005, In: Neurocomputing. 65-66, SPEC. ISS., p. 543-548 6 p.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Unsupervised learning of natural languages

Solan, Z., Horn, D., Ruppin, E. & Edelman, S., 16 Aug 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 33, p. 11629-11634 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

224 Scopus citations

2004

Analysis of spatiotemporal patterns in a model of olfaction

Kliper, O., Horn, D., Quenet, B. & Dror, G., Jun 2004, In: Neurocomputing. 58-60, p. 1027-1032 6 p.

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Dynamic proximity of spatio-temporal sequences

Horn, D., Dror, G. & Quenet, B., Sep 2004, In: IEEE Transactions on Neural Networks. 15, 5, p. 1002-1008 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Modeling of synchronized bursting events: The importance of inhomogeneity

Persi, E., Horn, D., Volman, V., Segev, R. & Ben-Jacob, E., Dec 2004, In: Neural Computation. 16, 12, p. 2577-2595 19 p.

Research output: Contribution to journal › Review article › peer-review

30 Scopus citations

Neural modeling of synchronized bursting events

Persi, E., Horn, D., Segev, R., Ben-Jacob, E. & Volman, V., Jun 2004, In: Neurocomputing. 58-60, p. 179-184 6 p.

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Synfire waves in small balanced networks

Aviel, Y., Horn, D. & Abeles, M., Jun 2004, In: Neurocomputing. 58-60, p. 123-127 5 p.

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

The doubly balanced network of spiking neurons: A memory model with high capacity

Aviel, Y., Horn, D. & Abeles, M., 2004, Advances in Neural Information Processing Systems 16 - Proceedings of the 2003 Conference, NIPS 2003. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Unsupervised context sensitive language acquisition from a large corpus

Solan, Z., Horn, D., Ruppin, E. & Edelman, S., 2004, Advances in Neural Information Processing Systems 16 - Proceedings of the 2003 Conference, NIPS 2003. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

10 Scopus citations

David Horn

Research output

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