Dan Graur

Simola, D. F., Wissler, L., Donahue, G., Waterhouse, R. M., Helmkampf, M., Roux, J., Nygaard, S., Glastad, K. M., Hagen, D. E., Viljakainen, L., Reese, J. T., Hunt, B. G., Graur, D., Elhaik, E., Kriventseva, E. V., Wen, J., Parker, B. J., Cash, E., Privman, E. & Childers, C. P. & 18 others, Munoz-Torres, M. C., Boomsma, J. J., Bornberg-Bauer, E., Currie, C. R., Elsik, C. G., Suen, G., Goodisman, M. A. D., Keller, L., Liebig, J., Rawls, A., Reinberg, D., Smith, C. D., Smith, C. R., Tsutsui, N., Wurm, Y., Zdobnov, E. M., Berger, S. L. & Gadau, J., Aug 2013, In: Genome Research. 23, 8, p. 1235-1247 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

201 Scopus citations

2011

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

Smith, C. D., Zimin, A., Holt, C., Abouheif, E., Benton, R., Cash, E., Croset, V., Currie, C. R., Elhaik, E., Elsik, C. G., Fave, M. J., Fernandes, V., Gadau, J., Gibson, J. D., Graur, D., Grubbs, K. J., Hagen, D. E., Helmkampf, M., Holley, J. A. & Hu, H. & 30 others, Viniegra, A. S. I., Johnson, B. R., Johnson, R. M., Khila, A., Kim, J. W., Laird, J., Mathis, K. A., Moeller, J. A., Muñoz-Torres, M. C., Murphy, M. C., Nakamura, R., Nigam, S., Overson, R. P., Placek, J. E., Rajakumar, R., Reese, J. T., Robertson, H. M., Smith, C. R., Suarez, A. V., Suen, G., Suhr, E. L., Tao, S., Torres, C. W., Van Wilgenburg, E., Viljakainen, L., Walden, K. K. O., Wild, A. L., Yandell, M., Yorke, J. A. & Tsutsui, N. D., 5 Apr 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 14, p. 5673-5678 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

240 Scopus citations

Draft genome of the red harvester ant Pogonomyrmex barbatus

Smith, C. R., Smith, C. D., Robertson, H. M., Helmkampf, M., Zimin, A., Yandell, M., Holt, C., Hu, H., Abouheif, E., Benton, R., Cash, E., Croset, V., Currie, C. R., Elhaik, E., Elsik, C. G., Favé, M. J., Fernandes, V., Gibson, J. D., Graur, D. & Gronenberg, W. & 25 others, Grubbs, K. J., Hagen, D. E., Viniegra, A. S. I., Johnson, B. R., Johnson, R. M., Khila, A., Kim, J. W., Mathis, K. A., Munoz-Torres, M. C., Murphy, M. C., Mustard, J. A., Nakamura, R., Niehuis, O., Nigam, S., Overson, R. P., Placek, J. E., Rajakumar, R., Reese, J. T., Suen, G., Tao, S., Torres, C. W., Tsutsui, N. D., Viljakainen, L., Wolschind, F. & Gadau, J., 5 Apr 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 14, p. 5667-5672 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

215 Scopus citations

Is there a twelfth protein-coding gene in the genome of influenza a? a selection-based approach to the detection of overlapping genes in closely related sequences

Sabath, N., Morris, J. S. & Graur, D., Dec 2011, In: Journal of Molecular Evolution. 73, 5-6, p. 305-315 11 p.

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Neutral evolution of Robustness in Drosophila microRNA precursors

Price, N., Cartwright, R. A., Sabath, N., Graur, D. & Azevedo, R. B. R., Jul 2011, In: Molecular Biology and Evolution. 28, 7, p. 2115-2123 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

20 Scopus citations

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

Suen, G., Teiling, C., Li, L., Holt, C., Abouheif, E., Bornberg-Bauer, E., Bouffard, P., Caldera, E. J., Cash, E., Cavanaugh, A., Denas, O., Elhaik, E., Favé, M. J., Gadau, J., Gibson, J. D., Graur, D., Grubbs, K. J., Hagen, D. E., Harkins, T. T. & Helmkampf, M. & 29 others, Hu, H., Johnson, B. R., Kim, J., Marsh, S. E., Moeller, J. A., Muñoz-TorresMó, M. C., Murphy, M. C., Naughton, M. C., Nigam, S., Overson, R., Rajakumar, R., Reese, J. T., Scott, J. J., Smith, C. R., Tao, S., Tsutsui, N. D., Viljakainen, L., Wissler, L., Yandell, M. D., Zimmer, F., Taylor, J., Slater, S. C., Clifton, S. W., Warren, W. C., Elsik, C. G., Smith, C. D., Weinstock, G. M., Gerardo, N. M. & Currie, C. R., Feb 2011, In: PLoS Genetics. 7, 2, e1002007.

Research output: Contribution to journal › Article › peer-review

Open Access

213 Scopus citations

The multiple personalities of Watson and Crick strands

Cartwright, R. A. & Graur, D., 8 Feb 2011, In: Biology Direct. 6, 7.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

2010

An alignment confidence score capturing robustness to guide tree uncertainty

Penn, O., Privman, E., Landan, G., Graur, D. & Pupko, T., 2010, In: Molecular Biology and Evolution. 27, 8, p. 1759-1767 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

296 Scopus citations

Comparative testing of DNA segmentation algorithms using benchmark simulations

Elhaik, E., Graur, D. & Josić, K., May 2010, In: Molecular Biology and Evolution. 27, 5, p. 1015-1024 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

15 Scopus citations

Detection of functional overlapping genes: Simulation and case studies

Sabath, N. & Graur, D., Oct 2010, In: Journal of Molecular Evolution. 71, 4, p. 308-316 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

15 Scopus citations

Functional and evolutionary insights from the genomes of three parasitoid nasonia species

Werren, J. H., Richards, S., Desjardins, C. A., Niehuis, O., Gadau, J., Colbourne, J. K., Beukeboom, L. W., Desplan, C., Elsik, C. G., Grimmelikhuijzen, C. J. P., Kitts, P., Lynch, J. A., Murphy, T., Oliveira, D. C. S. G., Smith, C. D., Van Zande, L. D., Worley, K. C., Zdobnov, E. M., Aerts, M. & Albert, S. & 136 others, Anaya, V. H., Anzola, J. M., Barchuk, A. R., Behura, S. K., Bera, A. N., Berenbaum, M. R., Bertossa, R. C., Bitondi, M. M. G., Bordenstein, S. R., Bork, P., Bornberg-Bauer, E., Brunain, M., Cazzamali, G., Chaboub, L., Chacko, J., Chavez, D., Childers, C. P., Choi, J. H., Clark, M. E., Claudianos, C., Clinton, R. A., Cree, A. G., Cristino, A. S., Dang, P. M., Darby, A. C., De Graaf, D. C., Devreese, B., Dinh, H. H., Edwards, R., Elango, N., Elhaik, E., Ermolaeva, O., Evans, J. D., Foret, S., Fowler, G. R., Gerlach, D., Gibson, J. D., Gilbert, D. G., Graur, D., Gründer, S., Hagen, D. E., Han, Y., Hauser, F., Hultmark, D., Hunter Iv, H. C., Hurst, G. D. D., Jhangian, S. N., Jiang, H., Johnson, R. M., Jones, A. K., Junier, T., Kadowaki, T., Kamping, A., Kapustin, Y., Kechavarzi, B., Kim, J., Kim, J., Kiryutin, B., Koevoets, T., Kovar, C. L., Kriventseva, E. V., Kucharski, R., Lee, H., Lee, S. L., Lees, K., Lewis, L. R., Loehlin, D. W., Logsdon, J. M., Lopez, J. A., Lozado, R. J., Maglott, D., Maleszka, R., Mayampurath, A., Mazur, D. J., McClure, M. A., Moore, A. D., Morgan, M. B., Muller, J., Munoz-Torres, M. C., Muzny, D. M., Nazareth, L. V., Neupert, S., Nguyen, N. B., Nunes, F. M. F., Oakeshott, J. G., Okwuonu, G. O., Pannebakker, B. A., Pejaver, V. R., Peng, Z., Pratt, S. C., Predel, R., Pu, L. L., Ranson, H., Raychoudhury, R., Rechtsteiner, A., Reese, J. T., Reid, J. G., Riddle, M., Hugh M Robertson, I. I., Romero-Severson, J., Rosenberg, M., Sackton, T. B., Sattelle, D. B., Schlüns, H., Schmitt, T., Schneider, M., Schüler, A., Schurko, A. M., Shuker, D. M., Simões, Z. L. P., Sinha, S., Smith, Z., Solovyev, V., Souvorov, A., Springauf, A., Stafflinger, E., Stage, D. E., Stanke, M., Tanaka, Y., Telschow, A., Vattathil, C. T. S., Eveline C Verhulst, I. I., Viljakainen, L., Wanner, K. W., Waterhouse, R. M., Whitfield, J. B., Wilkes, T. E., Williamson, M., Willis, J. H., Wolschin, F., Wyder, S., Yamada, T., Yi, S. V., Zecher, C. N., Zhang, L. & Gibbs, R. A., 15 Jan 2010, In: Science. 327, 5963, p. 343-348 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

714 Scopus citations

'Genome order index' should not be used for defining compositional constraints in nucleotide sequences - a case study of the Z-curve

Elhaik, E., Graur, D. & Josić, K., 17 Feb 2010, In: Biology Direct. 5, 10.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Kirkness, E. F., Haas, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubío, J. M. C., Ribeiro, J. M. C. & Rozas, J. & 51 others, Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, F. G., Aguadé, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N. K., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 27, p. 12168-12173 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

431 Scopus citations

GUIDANCE: A web server for assessing alignment confidence scores

Penn, O., Privman, E., Ashkenazy, H., Landan, G., Graur, D. & Pupko, T., 22 May 2010, In: Nucleic Acids Research. 38, SUPPL. 2, p. W23-W28 gkq443.

Research output: Contribution to journal › Article › peer-review

Open Access

525 Scopus citations

Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm

Elhaik, E., Graur, D., Josić, K. & Landan, G., 22 Jun 2010, In: Nucleic Acids Research. 38, 15, p. e158-e158 gkq532.

Research output: Contribution to journal › Article › peer-review

Open Access

15 Scopus citations

Revisiting the operational RNA code for amino acids: Ensemble attributes and their implications

Shaul, S., Berel, D., Benjamini, Y. & Graur, D., Jan 2010, In: RNA. 16, 1, p. 141-153 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

2009

A potentially novel overlapping gene in the genomes of Israeli acute paralysis virus and its relatives

Sabath, N., Price, N. & Graur, D., 2009, In: Virology Journal. 6, 144.

Research output: Contribution to journal › Article › peer-review

Open Access

28 Scopus citations

Can GC content at third-codon positions be used as a proxy for isochore composition?

Elhaik, E., Landan, G. & Graur, D., Aug 2009, In: Molecular Biology and Evolution. 26, 8, p. 1829-1833 5 p.

Research output: Contribution to journal › Article › peer-review

Open Access

35 Scopus citations

Characterization of pairwise and multiple sequence alignment errors

Landan, G. & Graur, D., 15 Jul 2009, In: Gene. 441, 1-2, p. 141-147 7 p.

Research output: Contribution to journal › Article › peer-review

33 Scopus citations

In Retrospect: Lamarck’s treatise at 200

Graur, D., Gouy, M. & Wool, D., 6 Aug 2009, In: Nature. 460, 7256, p. 688-689 2 p.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

The genome sequence of taurine cattle: A window to ruminant biology and evolution

Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M. & Schook, L. & 288 others, Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chappie, C. E., Chen, H. C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Larigford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Livanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L. L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, L. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., DeCampos, T. A., De Donato, M., De Miranda Santos, I. K. F., De Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dove, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z. L., Iivanainen, A., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C. M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., More, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincón, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., WeiKard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J. & Zhao, F. Q., 24 Apr 2009, In: Science. 324, 5926, p. 522-528 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

971 Scopus citations

2008

A method for the simultaneous estimation of selection intensities in overlapping genes

Sabath, N., Landan, G. & Graur, D., 22 Dec 2008, In: PLoS ONE. 3, 12, e3996.

Research output: Contribution to journal › Article › peer-review

Open Access

33 Scopus citations

'Genome order index' should not be used for defining compositional constraints in nucleotide sequences

Elhaik, E., Graur, D. & Josić, K., Apr 2008, In: Computational Biology and Chemistry. 32, 2, p. 147 1 p.

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

The genome of the model beetle and pest Tribolium castaneum

Richards, S., Gibbs, R. A., Weinstock, G. M., Brown, S. J., Denell, R., Beeman, R. W., Bucher, G., Friedrich, M., Grimmelikhuijzen, C. J. P., Klingler, M., Lorenzen, M., Roth, S., Schröder, R., Tautz, D., Zdobnov, E. M., Muzny, D., Attaway, T., Bell, S., Buhay, C. J. & Chandrabose, M. N. & 166 others, Chavez, D., Clerk-Blankenburg, K. P., Cree, A., Dao, M., Davis, C., Chacko, J., Dinh, H., Dugan-Rocha, S., Fowler, G., Garner, T. T., Garnes, J., Gnirke, A., Hawes, A., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Jackson, L., Kovar, C., Kowis, A., Lee, S., Lewis, L. R., Margolis, J., Morgan, M., Nazareth, L. V., Nguyen, N., Okwuonu, G., Parker, D., Ruiz, S. J., Santibanez, J., Savard, J., Scherer, S. E., Schneider, B., Sodergren, E., Vattahil, S., Villasana, D., White, C. S., Wright, R., Park, Y., Lord, J., Oppert, B., Wang, L., Liu, Y., Worley, K., Elsik, C. G., Reese, J. T., Elhaik, E., Landan, G., Graur, D., Arensburger, P., Atkinson, P., Beidler, J., Demuth, J. P., Drury, D. W., Du, Y. Z., Fujiwara, H., Maselli, V., Osanai, M., Robertson, H. M., Tu, Z., Wang, J. J., Wang, S., Song, H., Zhang, L., Werner, D., Stanke, M., Morgenstern, B., Solovyev, V., Kosarev, P., Brown, G., Chen, H. C., Ermolaeva, O., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Maglott, D., Pruitt, K., Sapojnikov, V., Souvorov, A., Mackey, A. J., Waterhouse, R. M., Wyder, S., Kriventseva, E. V., Kadowaki, T., Bork, P., Aranda, M., Bao, R., Beermann, A., Berns, N., Bolognesi, R., Bonneton, F., Bopp, D., Butts, T., Chaumot, A., Denell, R. E., Ferrier, D. E. K., Gordon, C. M., Jindra, M., Lan, Q., Lattorff, H. M. G., Laudet, V., Von Levetsow, C., Liu, Z., Lutz, R., Lynch, J. A., Da Fonseca, R. N., Posnien, N., Reuter, R., Schinko, J. B., Schmitt, C., Schoppmeier, M., Shippy, T. D., Simonnet, F., Marques-Souza, H., Tomoyasu, Y., Trauner, J., Van Der Zee, M., Vervoort, M., Wittkopp, N., Wimmer, E. A., Yang, X., Jones, A. K., Sattelle, D. B., Ebert, P. R., Nelson, D., Scott, J. G., Muthukrishnan, S., Kramer, K. J., Arakane, Y., Zhu, Q., Hogenkamp, D., Dixit, R., Jiang, H., Zou, Z., Lu, Z., Marshall, J., Sumathipala, N., Elpidina, E., Oppert, C., Evans, J., Altincicek, B., Vilcinskas, A., Williams, M., Hultmark, D., Hetru, C., Hauser, F., Cazzamali, G., Williamson, M., Li, B., Tanaka, Y., Predel, R., Neupert, S., Schachtner, J., Verleyen, P., Raible, F., Walden, K. K. O., Angeli, S., Forêt, S., Schuetz, S., Maleszka, R., Miller, S. C. & Grossmann, D., 24 Apr 2008, In: Nature. 452, 7190, p. 949-955 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1135 Scopus citations

2007

A comparative analysis of numt evolution in human and chimpanzee

Hazkani-Covo, E. & Graur, D., Jan 2007, In: Molecular Biology and Evolution. 24, 1, p. 13-18 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

85 Scopus citations

Heads or tails: A simple reliability check for multiple sequence alignments

Landan, G. & Graur, D., Jun 2007, In: Molecular Biology and Evolution. 24, 6, p. 1380-1383 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

158 Scopus citations

2006

A computational tool for the genomic identification of regions of unusual compositional properties and its utilization in the detection of horizontally transferred sequences

Putonti, C., Luo, Y., Katili, C., Chumakov, S., Fox, G. E., Graur, D. & Fofanov, Y., Oct 2006, In: Molecular Biology and Evolution. 23, 10, p. 1863-1868 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

11 Scopus citations

Insights into social insects from the genome of the honeybee Apis mellifera

Weinstock, G. M., Robinson, G. E., Gibbs, R. A., Worley, K. C., Evans, J. D., Maleszka, R., Robertson, H. M., Weaver, D. B., Beye, M., Bork, P., Elsik, C. G., Hartfelder, K., Hunt, G. J., Zdobnov, E. M., Amdam, G. V., Bitondi, M. M. G., Collins, A. M., Cristino, A. S., Lattorff, H. M. G. & Lobo, C. H. & 204 others, Moritz, R. F. A., Nunes, F. M. F., Page, R. E., Simões, Z. L. P., Wheeler, D., Carninci, P., Fukuda, S., Hayashizaki, Y., Kai, C., Kawai, J., Sakazume, N., Sasaki, D., Tagami, M., Albert, S., Baggerman, G., Beggs, K. T., Bloch, G., Cazzamali, G., Cohen, M., Drapeau, M. D., Eisenhardt, D., Emore, C., Ewing, M. A., Fahrbach, S. E., Forêt, S., Grimmelikhuijzen, C. J. P., Hauser, F., Hummon, A. B., Huybrechts, J., Jones, A. K., Kadowaki, T., Kaplan, N., Kucharski, R., Leboulle, G., Linial, M., Littleton, J. T., Mercer, A. R., Richmond, T. A., Rodriguez-Zas, S. L., Rubin, E. B., Sattelle, D. B., Schlipalius, D., Schoofs, L., Shemesh, Y., Sweedler, J. V., Velarde, R., Verleyen, P., Vierstraete, E., Williamson, M. R., Ament, S. A., Brown, S. J., Corona, M., Dearden, P. K., Dunn, W. A., Elekonich, M. M., Fujiyuki, T., Gattermeier, I., Gempe, T., Hasselmann, M., Kage, E., Kamikouchi, A., Kubo, T., Kunieda, T., Lorenzen, M., Milshina, N. V., Morioka, M., Ohashi, K., Overbeek, R., Ross, C. A., Schioett, M., Shippy, T., Takeuchi, H., Toth, A. L., Willis, J. H., Wilson, M. J., Gordon, K. H. J., Letunic, I., Hackett, K., Peterson, J., Felsenfeld, A., Guyer, M., Solignac, M., Agarwala, R., Cornuet, J. M., Monnerot, M., Mougel, F., Reese, J. T., Vautrin, D., Gillespie, J. J., Cannone, J. J., Gutell, R. R., Johnston, J. S., Eisen, M. B., Iyer, V. N., Iyer, V., Kosarev, P., Mackey, A. J., Solovyev, V., Souvorov, A., Aronstein, K. A., Bilikova, K., Chen, Y. P., Clark, A. G., Decanini, L. I., Gelbart, W. M., Hetru, C., Hultmark, D., Imler, J. L., Jiang, H., Kanost, M., Kimura, K., Lazzaro, B. P., Lopez, D. L., Simuth, J., Thompson, G. J., Zou, Z., De Jong, P., Sodergren, E., Csurös, M., Milosavljevic, A., Osoegawa, K., Richards, S., Shu, C. L., Duret, L., Elhaik, E., Graur, D., Anzola, J. M., Campbell, K. S., Childs, K. L., Collinge, D., Crosby, M. A., Dickens, C. M., Grametes, L. S., Grozinger, C. M., Jones, P. L., Jorda, M., Ling, X., Matthews, B. B., Miller, J., Mizzen, C., Peinado, M. A., Reid, J. G., Russo, S. M., Schroeder, A. J., St. Pierre, S. E., Wang, Y., Zhou, P., Jiang, H., Kitts, P., Ruef, B., Venkatraman, A., Zhang, L., Aquino-Perez, G., Whitfield, C. W., Behura, S. K., Berlocher, S. H., Sheppard, W. S., Smith, D. R., Suarez, A. V., Tsutsui, N. D., Wei, X., Wheeler, D., Havlak, P., Li, B., Liu, Y., Jovilet, A., Lee, S., Nazareth, L. V., Pu, L. L., Thorn, R., Stolc, V., Newman, T., Samanta, M., Tongprasit, W. A., Claudianos, C., Berenbaum, M. R., Biswas, S., De Graaf, D. C., Feyereisen, R., Johnson, R. M., Oakeshott, J. G., Ranson, H., Schuler, M. A., Muzny, D., Chacko, J., Davis, C., Dinh, H., Gill, R., Hernandez, J., Hines, S., Hume, J., Jackson, L. R., Kovar, C., Lewis, L., Miner, G., Morgan, M., Nguyen, N., Okwuonu, G., Paul, H., Santibanez, J., Savery, G., Svatek, A., Villasana, D. & Wright, R., 26 Oct 2006, In: Nature. 443, 7114, p. 931-949 19 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1569 Scopus citations

The "domino theory" of gene death: Gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens

Dagan, T., Blekhman, R. & Graur, D., Feb 2006, In: Molecular Biology and Evolution. 23, 2, p. 310-316 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

63 Scopus citations

The genome of the sea urchin Strongylocentrotus purpuratus

Sodergren, E., Weinstock, G. M., Davidson, E. H., Cameron, R. A., Gibbs, R. A., Angerer, R. C., Angerer, L. M., Arnone, M. I., Burgess, D. R., Burke, R. D., Coffman, J. A., Dean, M., Elphick, M. R., Ettensohn, C. A., Foltz, K. R., Hamdoun, A., Hynes, R. O., Klein, W. H., Marzluff, W. & McClay, D. R. & 211 others, Morris, R. L., Mushegian, A., Rast, J. P., Smith, L. C., Thorndyke, M. C., Vacquier, V. D., Wessel, G. M., Wray, G., Zhang, L., Elsik, C. G., Ermolaeva, O., Hlavina, W., Hofmann, G., Kitts, P., Landrum, M. J., Mackey, A. J., Maglott, D., Panopoulou, G., Poustka, A. J., Pruitt, K., Sapojnikov, V., Song, X., Souvorov, A., Solovyev, V., Wei, Z., Whittaker, C. A., Worley, K., Durbin, K. J., Shen, Y., Fedrigo, O., Garfield, D., Haygood, R., Primus, A., Satija, R., Severson, T., Gonzalez-Garay, M. L., Jackson, A. R., Milosavljevic, A., Tong, M., Killian, C. E., Livingston, B. T., Wilt, F. H., Adams, N., Bellé, R., Carbonneau, S., Cheung, R., Cormier, P., Cosson, B., Croce, J., Fernandez-Guerra, A., Genevière, A. M., Goel, M., Kelkar, H., Morales, J., Mulner-Lorillon, O., Robertson, A. J., Goldstone, J. V., Cole, B., Epel, D., Gold, B., Hahn, M. E., Howard-Ashby, M., Scally, M., Stegeman, J. J., Allgood, E. L., Cool, J., Judkins, K. M., McCafferty, S. S., Musante, A. M., Obar, R. A., Rawson, A. P., Rossetti, B. J., Gibbons, I. R., Hoffman, M. P., Leone, A., Istrail, S., Materna, S. C., Samanta, M. P., Stolc, V., Tongprasit, W., Tu, Q., Bergeron, K. F., Brandhorst, B. P., Whittle, J., Berney, K., Bottjer, D. J., Calestani, C., Peterson, K., Chow, E., Yuan, Q. A., Elhaik, E., Graur, D., Reese, J. T., Bosdet, I., Heesun, S., Marra, M. A., Schein, J., Anderson, M. K., Brockton, V., Buckley, K. M., Cohen, A. H., Fugmann, S. D., Hibino, T., Loza-Coll, M., Majeske, A. J., Messier, C., Nair, S. V., Pancer, Z., Terwilliger, D. P., Agca, C., Arboleda, E., Chen, N., Churcher, A. M., Hallböök, F., Humphrey, G. W., Idris, M. M., Kiyama, T., Liang, S., Mellott, D., Mu, X., Murray, G., Olinski, R. P., Raible, F., Rowe, M., Taylor, J. S., Tessmar-Raible, K., Wang, D., Wilson, K. H., Yaguchi, S., Gaasterland, T., Galindo, B. E., Gunaratne, H. J., Juliano, C., Kinukawa, M., Moy, G. W., Neill, A. T., Nomura, M., Raisch, M., Reade, A., Roux, M. M., Song, J. L., Su, Y. H., Townley, I. K., Voronina, E., Wong, J. L., Amore, G., Branno, M., Brown, E. R., Cavalieri, V., Duboc, V., Duloquin, L., Flytzanis, C., Gache, C., Lapraz, F., Lepage, T., Locascio, A., Martinez, P., Matassi, G., Matranga, V., Range, R., Rizzo, F., Röttinger, E., Wilson, K., Beane, W., Bradham, C., Byrum, C., Glenn, T., Hussain, S., Loza, M., Manning, G., Miranda, E., Thomason, R., Walton, K., Wikramanayke, A., Whittaker, C., Wu, S. Y., Xu, R., Brown, C. T., Chen, L., Gray, R. F., Lee, P. Y., Nam, J., Oliveri, P., Smith, J., Muzny, D., Bell, S., Chacko, J., Cree, A., Curry, S., Davis, C., Dinh, H., Dugan-Rocha, S., Fowler, J., Gill, R., Hamilton, C., Hernandez, J., Hines, S., Hume, J., Jackson, L. R., Jolivet, A., Kovar, C., Lee, S., Lewis, L., Miner, G., Morgan, M., Nazareth, L. V., Okwuonu, G., Parker, D., Pu, L. L., Thorn, R. & Wright, R., 10 Nov 2006, In: Science. 314, 5801, p. 941-952 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

961 Scopus citations

The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence

Elhaik, E., Sabath, N. & Graur, D., Jan 2006, In: Molecular Biology and Evolution. 23, 1, p. 1-3 3 p.

Research output: Contribution to journal › Article › peer-review

Open Access

60 Scopus citations

2005

GC composition of the human genome: In search of isochores

Cohen, N., Dagan, T., Stone, L. & Graur, D., May 2005, In: Molecular Biology and Evolution. 22, 5, p. 1260-1272 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

67 Scopus citations

Inferring the pattern of spontaneous mutation from the pattern of substitution in unitary pseudogenes of Mycobacterium leprae and a comparison of mutation patterns among distantly related organisms

Mitchell, A. & Graur, D., Dec 2005, In: Journal of Molecular Evolution. 61, 6, p. 795-803 9 p.

Research output: Contribution to journal › Article › peer-review

15 Scopus citations

In search of the vertebrate phylotypic stage: A molecular examination of the developmental hourglass model and von Baer's third law

Hazkani-Covo, E., Wool, D. & Graur, D., 15 Mar 2005, In: Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 304, 2, p. 150-158 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

70 Scopus citations

The comparative method rules! Codon volatility cannot detect positive Darwinian selection using a single genome sequence

Dagan, T. & Graur, D., Mar 2005, In: Molecular Biology and Evolution. 22, 3, p. 496-500 5 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

2004

AluGene: A database of Alu elements incorporated within protein-coding genes

Dagan, T., Sorek, R., Sharon, E., Ast, G. & Graur, D., 1 Jan 2004, In: Nucleic Acids Research. 32, DATABASE ISS., p. D489-D492

Research output: Contribution to journal › Article › peer-review

62 Scopus citations

Comparison of site-specific rate-inference methods for protein sequences: Empirical Bayesian methods are superior

Mayrose, I., Graur, D., Ben-Tal, N. & Pupko, T., Sep 2004, In: Molecular Biology and Evolution. 21, 9, p. 1781-1791 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

363 Scopus citations

Dan Graur

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