Dan Graur

Professor

Former affiliation
1982 …2022

Research activity per year

Search results

  • 2022
    Open Access
    3 Scopus citations
  • 2021

    On the unfounded enthusiasm for soft selective sweeps iii: The supervised machine learning algorithm that isn’t

    Elhaik, E. & Graur, D., Apr 2021, In: Genes. 12, 4, 527.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Scopus citations
  • Stop using 'master-slave' terminology in biology

    Graur, D., 1 May 2021, In: Nature. 593, 7858, p. 195 1 p.

    Research output: Contribution to journalLetterpeer-review

  • 2019
    Open Access
    1 Scopus citations
  • Mother tongue? Muttersprache? Lingua mater? Not so fast!

    Graur, D., 1 Mar 2019, In: National Science Review. 6, 2

    Research output: Contribution to journalComment/debate

    Open Access
  • ProtParCon: A framework for processing molecular data and identifying parallel and convergent amino acid replacements

    Yuan, F., Nguyen, H. & Graur, D., Mar 2019, In: Genes. 10, 3, 181.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    5 Scopus citations
  • 2018

    Correlated Selection on Amino Acid Deletion and Replacement in Mammalian Protein Sequences

    Zheng, Y., Graur, D. & Azevedo, R. B. R., 1 Jul 2018, In: Journal of Molecular Evolution. 86, 6, p. 365-378 14 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • 2017

    An upper limit on the functional fraction of the human genome

    Graur, D., 1 Jul 2017, In: Genome Biology and Evolution. 9, 7, p. 1880-1885 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    55 Scopus citations
  • 2016

    Are Synonymous Sites in Primates and Rodents Functionally Constrained?

    Price, N. & Graur, D., 1 Jan 2016, In: Journal of Molecular Evolution. 82, 1, p. 51-64 14 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • 2015

    An evolutionary classification of genomic function

    Graur, D., Zheng, Y. & Azevedo, R. B. R., Mar 2015, In: Genome Biology and Evolution. 7, 3, p. 642-645 4 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    65 Scopus citations
  • Reply to Mendez et al: The 'extremely ancient' chromosome that still isn't

    Elhaik, E., Tatarinova, T. V., Klyosov, A. A. & Graur, D., 21 May 2015, In: European Journal of Human Genetics. 23, 5, p. 567-568 2 p.

    Research output: Contribution to journalLetterpeer-review

    Open Access
    2 Scopus citations
  • 2014

    A Comparative Study and a Phylogenetic Exploration of the Compositional Architectures of Mammalian Nuclear Genomes

    Elhaik, E. & Graur, D., 1 Nov 2014, In: PLoS Computational Biology. 10, 11

    Research output: Contribution to journalArticlepeer-review

    Open Access
    6 Scopus citations
  • Finding the missing honey bee genes: Lessons learned from a genome upgrade

    HGSC production teams, 30 Jan 2014, In: BMC Genomics. 15, 1, 86.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    331 Scopus citations
  • Peer review: Payback time for referee refusal

    Graur, D., 2014, In: Nature. 505, 7484, p. 483 1 p.

    Research output: Contribution to journalLetterpeer-review

    Open Access
    7 Scopus citations
  • The 'extremely ancient' chromosome that isn't: A forensic bioinformatic investigation of Albert Perry's X-degenerate portion of the y chromosome

    Elhaik, E., Tatarinova, T. V., Klyosov, A. A. & Graur, D., Sep 2014, In: European Journal of Human Genetics. 22, 9, p. 1111-1116 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    23 Scopus citations
  • The parasite Trichomonas vaginalis expresses thousands of pseudogenes and long non-coding RNAs independently from functional neighbouring genes

    Woehle, C., Kusdian, G., Radine, C., Graur, D., Landan, G. & Gould, S. B., 2014, In: BMC Genomics. 15, 1, 906.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    28 Scopus citations
  • 2013

    Detecting negative selection on recurrent mutations using gene genealogy

    Ezawa, K., Landan, G. & Graur, D., 7 May 2013, In: BMC Genetics. 14, 37.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    3 Scopus citations
  • On the immortality of television sets: "Function" in the human genome according to the evolution-free gospel of encode

    Graur, D., Zheng, Y., Price, N., Azevedo, R. B. R., Zufall, R. A. & Elhaik, E., 2013, In: Genome Biology and Evolution. 5, 3, p. 578-590 13 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    360 Scopus citations
  • Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

    Simola, D. F., Wissler, L., Donahue, G., Waterhouse, R. M., Helmkampf, M., Roux, J., Nygaard, S., Glastad, K. M., Hagen, D. E., Viljakainen, L., Reese, J. T., Hunt, B. G., Graur, D., Elhaik, E., Kriventseva, E. V., Wen, J., Parker, B. J., Cash, E., Privman, E. & Childers, C. P. & 18 others, Munoz-Torres, M. C., Boomsma, J. J., Bornberg-Bauer, E., Currie, C. R., Elsik, C. G., Suen, G., Goodisman, M. A. D., Keller, L., Liebig, J., Rawls, A., Reinberg, D., Smith, C. D., Smith, C. R., Tsutsui, N., Wurm, Y., Zdobnov, E. M., Berger, S. L. & Gadau, J., Aug 2013, In: Genome Research. 23, 8, p. 1235-1247 13 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    201 Scopus citations
  • 2011

    Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

    Smith, C. D., Zimin, A., Holt, C., Abouheif, E., Benton, R., Cash, E., Croset, V., Currie, C. R., Elhaik, E., Elsik, C. G., Fave, M. J., Fernandes, V., Gadau, J., Gibson, J. D., Graur, D., Grubbs, K. J., Hagen, D. E., Helmkampf, M., Holley, J. A. & Hu, H. & 30 others, Viniegra, A. S. I., Johnson, B. R., Johnson, R. M., Khila, A., Kim, J. W., Laird, J., Mathis, K. A., Moeller, J. A., Muñoz-Torres, M. C., Murphy, M. C., Nakamura, R., Nigam, S., Overson, R. P., Placek, J. E., Rajakumar, R., Reese, J. T., Robertson, H. M., Smith, C. R., Suarez, A. V., Suen, G., Suhr, E. L., Tao, S., Torres, C. W., Van Wilgenburg, E., Viljakainen, L., Walden, K. K. O., Wild, A. L., Yandell, M., Yorke, J. A. & Tsutsui, N. D., 5 Apr 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 14, p. 5673-5678 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    240 Scopus citations
  • Draft genome of the red harvester ant Pogonomyrmex barbatus

    Smith, C. R., Smith, C. D., Robertson, H. M., Helmkampf, M., Zimin, A., Yandell, M., Holt, C., Hu, H., Abouheif, E., Benton, R., Cash, E., Croset, V., Currie, C. R., Elhaik, E., Elsik, C. G., Favé, M. J., Fernandes, V., Gibson, J. D., Graur, D. & Gronenberg, W. & 25 others, Grubbs, K. J., Hagen, D. E., Viniegra, A. S. I., Johnson, B. R., Johnson, R. M., Khila, A., Kim, J. W., Mathis, K. A., Munoz-Torres, M. C., Murphy, M. C., Mustard, J. A., Nakamura, R., Niehuis, O., Nigam, S., Overson, R. P., Placek, J. E., Rajakumar, R., Reese, J. T., Suen, G., Tao, S., Torres, C. W., Tsutsui, N. D., Viljakainen, L., Wolschind, F. & Gadau, J., 5 Apr 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 14, p. 5667-5672 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    215 Scopus citations
  • Is there a twelfth protein-coding gene in the genome of influenza a? a selection-based approach to the detection of overlapping genes in closely related sequences

    Sabath, N., Morris, J. S. & Graur, D., Dec 2011, In: Journal of Molecular Evolution. 73, 5-6, p. 305-315 11 p.

    Research output: Contribution to journalArticlepeer-review

    13 Scopus citations
  • Neutral evolution of Robustness in Drosophila microRNA precursors

    Price, N., Cartwright, R. A., Sabath, N., Graur, D. & Azevedo, R. B. R., Jul 2011, In: Molecular Biology and Evolution. 28, 7, p. 2115-2123 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    20 Scopus citations
  • The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

    Suen, G., Teiling, C., Li, L., Holt, C., Abouheif, E., Bornberg-Bauer, E., Bouffard, P., Caldera, E. J., Cash, E., Cavanaugh, A., Denas, O., Elhaik, E., Favé, M. J., Gadau, J., Gibson, J. D., Graur, D., Grubbs, K. J., Hagen, D. E., Harkins, T. T. & Helmkampf, M. & 29 others, Hu, H., Johnson, B. R., Kim, J., Marsh, S. E., Moeller, J. A., Muñoz-TorresMó, M. C., Murphy, M. C., Naughton, M. C., Nigam, S., Overson, R., Rajakumar, R., Reese, J. T., Scott, J. J., Smith, C. R., Tao, S., Tsutsui, N. D., Viljakainen, L., Wissler, L., Yandell, M. D., Zimmer, F., Taylor, J., Slater, S. C., Clifton, S. W., Warren, W. C., Elsik, C. G., Smith, C. D., Weinstock, G. M., Gerardo, N. M. & Currie, C. R., Feb 2011, In: PLoS Genetics. 7, 2, e1002007.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    213 Scopus citations
  • The multiple personalities of Watson and Crick strands

    Cartwright, R. A. & Graur, D., 8 Feb 2011, In: Biology Direct. 6, 7.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    8 Scopus citations
  • 2010

    An alignment confidence score capturing robustness to guide tree uncertainty

    Penn, O., Privman, E., Landan, G., Graur, D. & Pupko, T., 2010, In: Molecular Biology and Evolution. 27, 8, p. 1759-1767 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    296 Scopus citations
  • Comparative testing of DNA segmentation algorithms using benchmark simulations

    Elhaik, E., Graur, D. & Josić, K., May 2010, In: Molecular Biology and Evolution. 27, 5, p. 1015-1024 10 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    15 Scopus citations
  • Detection of functional overlapping genes: Simulation and case studies

    Sabath, N. & Graur, D., Oct 2010, In: Journal of Molecular Evolution. 71, 4, p. 308-316 9 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    15 Scopus citations
  • Functional and evolutionary insights from the genomes of three parasitoid nasonia species

    Werren, J. H., Richards, S., Desjardins, C. A., Niehuis, O., Gadau, J., Colbourne, J. K., Beukeboom, L. W., Desplan, C., Elsik, C. G., Grimmelikhuijzen, C. J. P., Kitts, P., Lynch, J. A., Murphy, T., Oliveira, D. C. S. G., Smith, C. D., Van Zande, L. D., Worley, K. C., Zdobnov, E. M., Aerts, M. & Albert, S. & 136 others, Anaya, V. H., Anzola, J. M., Barchuk, A. R., Behura, S. K., Bera, A. N., Berenbaum, M. R., Bertossa, R. C., Bitondi, M. M. G., Bordenstein, S. R., Bork, P., Bornberg-Bauer, E., Brunain, M., Cazzamali, G., Chaboub, L., Chacko, J., Chavez, D., Childers, C. P., Choi, J. H., Clark, M. E., Claudianos, C., Clinton, R. A., Cree, A. G., Cristino, A. S., Dang, P. M., Darby, A. C., De Graaf, D. C., Devreese, B., Dinh, H. H., Edwards, R., Elango, N., Elhaik, E., Ermolaeva, O., Evans, J. D., Foret, S., Fowler, G. R., Gerlach, D., Gibson, J. D., Gilbert, D. G., Graur, D., Gründer, S., Hagen, D. E., Han, Y., Hauser, F., Hultmark, D., Hunter Iv, H. C., Hurst, G. D. D., Jhangian, S. N., Jiang, H., Johnson, R. M., Jones, A. K., Junier, T., Kadowaki, T., Kamping, A., Kapustin, Y., Kechavarzi, B., Kim, J., Kim, J., Kiryutin, B., Koevoets, T., Kovar, C. L., Kriventseva, E. V., Kucharski, R., Lee, H., Lee, S. L., Lees, K., Lewis, L. R., Loehlin, D. W., Logsdon, J. M., Lopez, J. A., Lozado, R. J., Maglott, D., Maleszka, R., Mayampurath, A., Mazur, D. J., McClure, M. A., Moore, A. D., Morgan, M. B., Muller, J., Munoz-Torres, M. C., Muzny, D. M., Nazareth, L. V., Neupert, S., Nguyen, N. B., Nunes, F. M. F., Oakeshott, J. G., Okwuonu, G. O., Pannebakker, B. A., Pejaver, V. R., Peng, Z., Pratt, S. C., Predel, R., Pu, L. L., Ranson, H., Raychoudhury, R., Rechtsteiner, A., Reese, J. T., Reid, J. G., Riddle, M., Hugh M Robertson, I. I., Romero-Severson, J., Rosenberg, M., Sackton, T. B., Sattelle, D. B., Schlüns, H., Schmitt, T., Schneider, M., Schüler, A., Schurko, A. M., Shuker, D. M., Simões, Z. L. P., Sinha, S., Smith, Z., Solovyev, V., Souvorov, A., Springauf, A., Stafflinger, E., Stage, D. E., Stanke, M., Tanaka, Y., Telschow, A., Vattathil, C. T. S., Eveline C Verhulst, I. I., Viljakainen, L., Wanner, K. W., Waterhouse, R. M., Whitfield, J. B., Wilkes, T. E., Williamson, M., Willis, J. H., Wolschin, F., Wyder, S., Yamada, T., Yi, S. V., Zecher, C. N., Zhang, L. & Gibbs, R. A., 15 Jan 2010, In: Science. 327, 5963, p. 343-348 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    714 Scopus citations
  • 'Genome order index' should not be used for defining compositional constraints in nucleotide sequences - a case study of the Z-curve

    Elhaik, E., Graur, D. & Josić, K., 17 Feb 2010, In: Biology Direct. 5, 10.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Scopus citations
  • Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

    Kirkness, E. F., Haas, B. J., Sun, W., Braig, H. R., Perotti, M. A., Clark, J. M., Lee, S. H., Robertson, H. M., Kennedy, R. C., Elhaik, E., Gerlach, D., Kriventseva, E. V., Elsik, C. G., Graur, D., Hill, C. A., Veenstra, J. A., Walenz, B., Tubío, J. M. C., Ribeiro, J. M. C. & Rozas, J. & 51 others, Johnston, J. S., Reese, J. T., Popadic, A., Tojo, M., Raoult, D., Reed, D. L., Tomoyasu, Y., Krause, E., Mittapalli, O., Margam, V. M., Li, H. M., Meyer, J. M., Johnson, R. M., Romero-Severson, J., VanZee, J. P., Alvarez-Ponce, D., Vieira, F. G., Aguadé, M., Guirao-Rico, S., Anzola, J. M., Yoon, K. S., Strycharz, J. P., Unger, M. F., Christley, S., Lobo, N. F., Seufferheld, M. J., Wang, N. K., Dasch, G. A., Struchiner, C. J., Madey, G., Hannick, L. I., Bidwell, S., Joardar, V., Caler, E., Shao, R., Barker, S. C., Cameron, S., Bruggner, R. V., Regier, A., Johnson, J., Viswanathan, L., Utterback, T. R., Sutton, G. G., Lawson, D., Waterhouse, R. M., Venter, J. C., Strausberg, R. L., Berenbaum, M. R., Collins, F. H., Zdobnov, E. M. & Pittendrigh, B. R., 6 Jul 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 27, p. 12168-12173 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    431 Scopus citations
  • GUIDANCE: A web server for assessing alignment confidence scores

    Penn, O., Privman, E., Ashkenazy, H., Landan, G., Graur, D. & Pupko, T., 22 May 2010, In: Nucleic Acids Research. 38, SUPPL. 2, p. W23-W28 gkq443.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    525 Scopus citations
  • Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm

    Elhaik, E., Graur, D., Josić, K. & Landan, G., 22 Jun 2010, In: Nucleic Acids Research. 38, 15, p. e158-e158 gkq532.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    15 Scopus citations
  • Revisiting the operational RNA code for amino acids: Ensemble attributes and their implications

    Shaul, S., Berel, D., Benjamini, Y. & Graur, D., Jan 2010, In: RNA. 16, 1, p. 141-153 13 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    12 Scopus citations
  • 2009

    About the cover: 1859 and all that

    Graur, D., May 2009, In: Molecular Biology and Evolution. 26, 5, p. 1193 1 p.

    Research output: Contribution to journalEditorial

    Open Access
  • A potentially novel overlapping gene in the genomes of Israeli acute paralysis virus and its relatives

    Sabath, N., Price, N. & Graur, D., 2009, In: Virology Journal. 6, 144.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    28 Scopus citations
  • Can GC content at third-codon positions be used as a proxy for isochore composition?

    Elhaik, E., Landan, G. & Graur, D., Aug 2009, In: Molecular Biology and Evolution. 26, 8, p. 1829-1833 5 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    35 Scopus citations
  • Characterization of pairwise and multiple sequence alignment errors

    Landan, G. & Graur, D., 15 Jul 2009, In: Gene. 441, 1-2, p. 141-147 7 p.

    Research output: Contribution to journalArticlepeer-review

    33 Scopus citations
  • In Retrospect: Lamarck’s treatise at 200

    Graur, D., Gouy, M. & Wool, D., 6 Aug 2009, In: Nature. 460, 7256, p. 688-689 2 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    6 Scopus citations
  • The genome sequence of taurine cattle: A window to ruminant biology and evolution

    Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M. & Schook, L. & 288 others, Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chappie, C. E., Chen, H. C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Larigford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Livanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L. L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, L. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., DeCampos, T. A., De Donato, M., De Miranda Santos, I. K. F., De Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dove, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z. L., Iivanainen, A., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C. M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., More, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincón, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., WeiKard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J. & Zhao, F. Q., 24 Apr 2009, In: Science. 324, 5926, p. 522-528 7 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    971 Scopus citations
  • 2008

    A method for the simultaneous estimation of selection intensities in overlapping genes

    Sabath, N., Landan, G. & Graur, D., 22 Dec 2008, In: PLoS ONE. 3, 12, e3996.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    33 Scopus citations
  • 'Genome order index' should not be used for defining compositional constraints in nucleotide sequences

    Elhaik, E., Graur, D. & Josić, K., Apr 2008, In: Computational Biology and Chemistry. 32, 2, p. 147 1 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • Local reliability measures from sets of co-optimal multiple sequence alignments

    Landan, G. & Graur, D., 2008, Pacific Symposium on Biocomputing 2008, PSB 2008. p. 15-24 10 p. (Pacific Symposium on Biocomputing 2008, PSB 2008).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    105 Scopus citations
  • Same-strand overlapping genes in bacteria: Compositional determinants of phase bias

    Sabath, N., Graur, D. & Landan, G., 21 Aug 2008, In: Biology Direct. 3, 36.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
    23 Scopus citations
  • The genome of the model beetle and pest Tribolium castaneum

    Richards, S., Gibbs, R. A., Weinstock, G. M., Brown, S. J., Denell, R., Beeman, R. W., Bucher, G., Friedrich, M., Grimmelikhuijzen, C. J. P., Klingler, M., Lorenzen, M., Roth, S., Schröder, R., Tautz, D., Zdobnov, E. M., Muzny, D., Attaway, T., Bell, S., Buhay, C. J. & Chandrabose, M. N. & 166 others, Chavez, D., Clerk-Blankenburg, K. P., Cree, A., Dao, M., Davis, C., Chacko, J., Dinh, H., Dugan-Rocha, S., Fowler, G., Garner, T. T., Garnes, J., Gnirke, A., Hawes, A., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Jackson, L., Kovar, C., Kowis, A., Lee, S., Lewis, L. R., Margolis, J., Morgan, M., Nazareth, L. V., Nguyen, N., Okwuonu, G., Parker, D., Ruiz, S. J., Santibanez, J., Savard, J., Scherer, S. E., Schneider, B., Sodergren, E., Vattahil, S., Villasana, D., White, C. S., Wright, R., Park, Y., Lord, J., Oppert, B., Wang, L., Liu, Y., Worley, K., Elsik, C. G., Reese, J. T., Elhaik, E., Landan, G., Graur, D., Arensburger, P., Atkinson, P., Beidler, J., Demuth, J. P., Drury, D. W., Du, Y. Z., Fujiwara, H., Maselli, V., Osanai, M., Robertson, H. M., Tu, Z., Wang, J. J., Wang, S., Song, H., Zhang, L., Werner, D., Stanke, M., Morgenstern, B., Solovyev, V., Kosarev, P., Brown, G., Chen, H. C., Ermolaeva, O., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Maglott, D., Pruitt, K., Sapojnikov, V., Souvorov, A., Mackey, A. J., Waterhouse, R. M., Wyder, S., Kriventseva, E. V., Kadowaki, T., Bork, P., Aranda, M., Bao, R., Beermann, A., Berns, N., Bolognesi, R., Bonneton, F., Bopp, D., Butts, T., Chaumot, A., Denell, R. E., Ferrier, D. E. K., Gordon, C. M., Jindra, M., Lan, Q., Lattorff, H. M. G., Laudet, V., Von Levetsow, C., Liu, Z., Lutz, R., Lynch, J. A., Da Fonseca, R. N., Posnien, N., Reuter, R., Schinko, J. B., Schmitt, C., Schoppmeier, M., Shippy, T. D., Simonnet, F., Marques-Souza, H., Tomoyasu, Y., Trauner, J., Van Der Zee, M., Vervoort, M., Wittkopp, N., Wimmer, E. A., Yang, X., Jones, A. K., Sattelle, D. B., Ebert, P. R., Nelson, D., Scott, J. G., Muthukrishnan, S., Kramer, K. J., Arakane, Y., Zhu, Q., Hogenkamp, D., Dixit, R., Jiang, H., Zou, Z., Lu, Z., Marshall, J., Sumathipala, N., Elpidina, E., Oppert, C., Evans, J., Altincicek, B., Vilcinskas, A., Williams, M., Hultmark, D., Hetru, C., Hauser, F., Cazzamali, G., Williamson, M., Li, B., Tanaka, Y., Predel, R., Neupert, S., Schachtner, J., Verleyen, P., Raible, F., Walden, K. K. O., Angeli, S., Forêt, S., Schuetz, S., Maleszka, R., Miller, S. C. & Grossmann, D., 24 Apr 2008, In: Nature. 452, 7190, p. 949-955 7 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1135 Scopus citations
  • 2007

    A comparative analysis of numt evolution in human and chimpanzee

    Hazkani-Covo, E. & Graur, D., Jan 2007, In: Molecular Biology and Evolution. 24, 1, p. 13-18 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    85 Scopus citations
  • Heads or tails: A simple reliability check for multiple sequence alignments

    Landan, G. & Graur, D., Jun 2007, In: Molecular Biology and Evolution. 24, 6, p. 1380-1383 4 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    158 Scopus citations
  • Public control could be a nightmare for researchers [2]

    Graur, D., 20 Dec 2007, In: Nature. 450, 7173, p. 1156 1 p.

    Research output: Contribution to journalLetterpeer-review

    Open Access
    10 Scopus citations
  • 2006

    A computational tool for the genomic identification of regions of unusual compositional properties and its utilization in the detection of horizontally transferred sequences

    Putonti, C., Luo, Y., Katili, C., Chumakov, S., Fox, G. E., Graur, D. & Fofanov, Y., Oct 2006, In: Molecular Biology and Evolution. 23, 10, p. 1863-1868 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    11 Scopus citations
  • Insights into social insects from the genome of the honeybee Apis mellifera

    Weinstock, G. M., Robinson, G. E., Gibbs, R. A., Worley, K. C., Evans, J. D., Maleszka, R., Robertson, H. M., Weaver, D. B., Beye, M., Bork, P., Elsik, C. G., Hartfelder, K., Hunt, G. J., Zdobnov, E. M., Amdam, G. V., Bitondi, M. M. G., Collins, A. M., Cristino, A. S., Lattorff, H. M. G. & Lobo, C. H. & 204 others, Moritz, R. F. A., Nunes, F. M. F., Page, R. E., Simões, Z. L. P., Wheeler, D., Carninci, P., Fukuda, S., Hayashizaki, Y., Kai, C., Kawai, J., Sakazume, N., Sasaki, D., Tagami, M., Albert, S., Baggerman, G., Beggs, K. T., Bloch, G., Cazzamali, G., Cohen, M., Drapeau, M. D., Eisenhardt, D., Emore, C., Ewing, M. A., Fahrbach, S. E., Forêt, S., Grimmelikhuijzen, C. J. P., Hauser, F., Hummon, A. B., Huybrechts, J., Jones, A. K., Kadowaki, T., Kaplan, N., Kucharski, R., Leboulle, G., Linial, M., Littleton, J. T., Mercer, A. R., Richmond, T. A., Rodriguez-Zas, S. L., Rubin, E. B., Sattelle, D. B., Schlipalius, D., Schoofs, L., Shemesh, Y., Sweedler, J. V., Velarde, R., Verleyen, P., Vierstraete, E., Williamson, M. R., Ament, S. A., Brown, S. J., Corona, M., Dearden, P. K., Dunn, W. A., Elekonich, M. M., Fujiyuki, T., Gattermeier, I., Gempe, T., Hasselmann, M., Kage, E., Kamikouchi, A., Kubo, T., Kunieda, T., Lorenzen, M., Milshina, N. V., Morioka, M., Ohashi, K., Overbeek, R., Ross, C. A., Schioett, M., Shippy, T., Takeuchi, H., Toth, A. L., Willis, J. H., Wilson, M. J., Gordon, K. H. J., Letunic, I., Hackett, K., Peterson, J., Felsenfeld, A., Guyer, M., Solignac, M., Agarwala, R., Cornuet, J. M., Monnerot, M., Mougel, F., Reese, J. T., Vautrin, D., Gillespie, J. J., Cannone, J. J., Gutell, R. R., Johnston, J. S., Eisen, M. B., Iyer, V. N., Iyer, V., Kosarev, P., Mackey, A. J., Solovyev, V., Souvorov, A., Aronstein, K. A., Bilikova, K., Chen, Y. P., Clark, A. G., Decanini, L. I., Gelbart, W. M., Hetru, C., Hultmark, D., Imler, J. L., Jiang, H., Kanost, M., Kimura, K., Lazzaro, B. P., Lopez, D. L., Simuth, J., Thompson, G. J., Zou, Z., De Jong, P., Sodergren, E., Csurös, M., Milosavljevic, A., Osoegawa, K., Richards, S., Shu, C. L., Duret, L., Elhaik, E., Graur, D., Anzola, J. M., Campbell, K. S., Childs, K. L., Collinge, D., Crosby, M. A., Dickens, C. M., Grametes, L. S., Grozinger, C. M., Jones, P. L., Jorda, M., Ling, X., Matthews, B. B., Miller, J., Mizzen, C., Peinado, M. A., Reid, J. G., Russo, S. M., Schroeder, A. J., St. Pierre, S. E., Wang, Y., Zhou, P., Jiang, H., Kitts, P., Ruef, B., Venkatraman, A., Zhang, L., Aquino-Perez, G., Whitfield, C. W., Behura, S. K., Berlocher, S. H., Sheppard, W. S., Smith, D. R., Suarez, A. V., Tsutsui, N. D., Wei, X., Wheeler, D., Havlak, P., Li, B., Liu, Y., Jovilet, A., Lee, S., Nazareth, L. V., Pu, L. L., Thorn, R., Stolc, V., Newman, T., Samanta, M., Tongprasit, W. A., Claudianos, C., Berenbaum, M. R., Biswas, S., De Graaf, D. C., Feyereisen, R., Johnson, R. M., Oakeshott, J. G., Ranson, H., Schuler, M. A., Muzny, D., Chacko, J., Davis, C., Dinh, H., Gill, R., Hernandez, J., Hines, S., Hume, J., Jackson, L. R., Kovar, C., Lewis, L., Miner, G., Morgan, M., Nguyen, N., Okwuonu, G., Paul, H., Santibanez, J., Savery, G., Svatek, A., Villasana, D. & Wright, R., 26 Oct 2006, In: Nature. 443, 7114, p. 931-949 19 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1569 Scopus citations