The Shmunis School of Biomedicine and Cancer Research

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  • 2022

    Unclonable Polymers and Their Cryptographic Applications

    Almashaqbeh, G., Canetti, R., Erlich, Y., Gershoni, J., Malkin, T., Pe’er, I., Roitburd-Berman, A. & Tromer, E., 2022, Advances in Cryptology – EUROCRYPT 2022 - 41st Annual International Conference on the Theory and Applications of Cryptographic Techniques, 2022, Proceedings. Dunkelman, O. & Dziembowski, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 759-789 31 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13275 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • 2015

    A novel probabilistic methodology for eQTL analysis of signaling networks

    Wilentzik, R. & Gat-Viks, I., 2015, Research in Computational Molecular Biology - 19th Annual International Conference, RECOMB 2015, Proceedings. Przytycka, T. M. (ed.). Springer Verlag, p. 338-339 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9029).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Multiple-ancestor localization for recently admixed individuals

    Margalit, Y., Baran, Y. & Halperin, E., 2015, Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Proceedings. Pop, M. & Touzet, H. (eds.). Springer Verlag, p. 121-135 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9289).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 2013

    A minimum-labeling approach for reconstructing protein networks across multiple conditions

    Mazza, A., Gat-Viks, I., Farhan, H. & Sharan, R., 2013, Algorithms in Bioinformatics - 13th International Workshop, WABI 2013, Proceedings. Springer Verlag, p. 33-44 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8126 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • eALPS: Estimating abundance levels in pooled sequencing using available genotyping data

    Eskin, I., Hormozdiari, F., Conde, L., Riby, J., Skibola, C., Eskin, E. & Halperin, E., 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 32-44 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Learning natural selection from the site frequency spectrum

    Ronen, R., Udpa, N., Halperin, E. & Bafna, V., 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 230-233 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2012

    CNVeM: Copy number variation detection using uncertainty of read mapping

    Wang, Z., Hormozdiari, F., Yang, W. Y., Halperin, E. & Eskin, E., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 326-340 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    2 Scopus citations
  • Probabilistic inference of viral quasispecies subject to recombination

    Zagordi, O., Töpfer, A., Prabhakaran, S., Roth, V., Halperin, E. & Beerenwinkel, N., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 342-354 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    13 Scopus citations
  • 2011

    A Ribosome Flow Model for Analyzing Translation Elongation: (Extended Abstract)

    Reuveni, S., Meilijson, I., Kupiec, M., Ruppin, E. & Tuller, T., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 358-360 3 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Pedigree Reconstruction Using Identity by Descent

    Kirkpatrick, B., Li, S. C., Karp, R. M. & Halperin, E., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 136-152 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    8 Scopus citations
  • Understanding Gene Sequence Variation in the Context of Transcription Regulation in Yeast

    Gat-Viks, I., Meller, R., Kupiec, M. & Shamir, R., 2011, Research in Computational Molecular Biology - 15th Annual International Conference, RECOMB 2011, Proceedings. Bafna, V. & Sahinalp, S. C. (eds.). Springer Verlag, p. 69 1 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6577 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Open Access
  • 2010

    Accurate estimation of expression levels of homologous genes in RNA-seq experiments

    Paşaniuc, B., Zaitlen, N. & Halperin, E., 2010, Research in Computational Molecular Biology - 14th Annual International Conference, RECOMB 2010, Proceedings. p. 397-409 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6044 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    15 Scopus citations
  • Adjustment of protein crystal porosity for biotemplating: Chemical and protein engineering tools

    Wine, Y., Cohen-Hadar, N., Lagziel-Simis, S., Dror, Y., Frolow, F. & Freeman, A., 2010, Porous Media and Its Applications in Science, Engineering, and Industry - Third International Conference. p. 198-203 6 p. (AIP Conference Proceedings; vol. 1254).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations
  • Electronically directed integration of whole-cell biosensors on bio-chips

    Ben-Yoav, H., Freeman, A., Sternheim, M., Fishelson, N., Rubin, A., Biran, A., Pedahzur, R., Belkin, S. & Shacham-Diamand, Y., 2010, Chemical Sensors 9 -and- MEMS/NEMS 9. 8 ed. Electrochemical Society Inc., p. 49-58 10 p. (ECS Transactions; vol. 33, no. 8).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • Rapid and sensitive homogenous detection of the Ibaraki virus non-structural protein using magnetic modulation biosensing system

    Danielli, A., Porat, N., Arie, A. & Ehrlich, M., 2010, Frontiers in Pathogen Detection: From Nanosensors to Systems. 75530B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7553).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2009

    A novel microfluidic whole cell biosensor based on electrochemical detection for water toxicity analysis

    Ben-Yoav, H., Shacham-Diamand, Y., Freeman, A., Biran, A., Pedahzur, R., Belkin, S., Buchinger, S. & Reifferscheid, G., 2009, ECS Transactions - Chemical Sensors 8: Chemical (Gas, Ion, Bio) Sensors and Analytical Systems. 11 ed. Electrochemical Society Inc., p. 187-197 11 p. (ECS Transactions; vol. 16, no. 11).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    3 Scopus citations
  • Co-evolutionary models for reconstructing ancestral genomic sequences: Computational issues and biological examples

    Tuller, T., Birin, H., Kupiec, M. & Ruppin, E., 2009, Comparative Genomics - International Workshop, RECOMB-CG 2009, Proceedings. p. 164-180 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5817 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Direct biopsy screening of colorectal cancer by electrochemical biosensor

    Vernick, S., Freeman, A., Rishpon, J. & Shacham-Diamand, Y., 2009, Electrochemistry in Medicine and Biomedical Applications. 33 ed. Electrochemical Society Inc., p. 61-68 8 p. (ECS Transactions; vol. 19, no. 33).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Filamentous bacterial viruses break down amyloid plaques in an animal model of Alzheimer's disease - A novel therapeutic avenue

    Solomon, B., 2009, Technical Proceedings of the 2009 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2009. p. 123-126 4 p. (Technical Proceedings of the 2009 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2009; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • Haplotype inference in complex pedigrees

    Kirkpatrick, B., Rosa, J., Halperin, E. & Karp, R. M., 2009, Research in Computational Molecular Biology - 13th Annual International Conference, RECOMB 2009, Proceedings. Springer Verlag, p. 108-120 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5541 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 2008

    Targeted drug-carrying filamentous phage nanomedicines

    Yacoby, I., Bar, H., Vax, L. & Benhar, I., 2008, Technical Proceedings of the 2008 NSTI Nanotechnology Conference and Trade Show, NSTI-Nanotech, Nanotechnology 2008. p. 438-441 4 p. (Technical Proceedings of the 2008 NSTI Nanotechnology Conference and Trade Show, NSTI-Nanotech, Nanotechnology 2008; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2006

    Electrochemical 'Lab on a chip' for toxicity detection in water

    Popovtzer, R., Neufeld, T., Ron, E. Z., Rishpon, J. & Shacham-Diamand, Y., 2006, 2006 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2006 Technical Proceedings. p. 205-208 4 p. (2006 NSTI Nanotechnology Conference and Trade Show - NSTI Nanotech 2006 Technical Proceedings; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2005

    Towards micro-machined peptide nanotube based devices

    Kalifa, I., Reches, M., Sopher, N., Gazit, E. & Hanein, Y., 2005, TRANSDUCERS '05 - 13th International Conference on Solid-State Sensors and Actuators and Microsystems - Digest of Technical Papers. p. 1509-1512 4 p. 3E4.53. (Digest of Technical Papers - International Conference on Solid State Sensors and Actuators and Microsystems, TRANSDUCERS '05; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 2004

    Multi-knockout genetic network analysis: The Rad6 example

    Kaufman, A., Kupiec, M. & Ruppin, E., 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. IEEE Computer Society, p. 332-340 9 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    19 Scopus citations
  • 2002

    Electrochemical biosensors for on-site analysis

    Shwartz Mittelmann, A., Neufeld, T. & Rishpon, J., 2002, Proceedings of the IEEE-EMBS Special Topic Conference on Molecular, Cellular and Tissue Engineering, MCTE 2002. Institute of Electrical and Electronics Engineers Inc., p. 54-55 2 p. 1175000. (Proceedings of the IEEE-EMBS Special Topic Conference on Molecular, Cellular and Tissue Engineering, MCTE 2002).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    1 Scopus citations
  • 1999

    Approximation algorithms for MAX 4-SAT and rounding procedures for semidefinite programs

    Halperin, E. & Zwick, U., 1999, Integer Programming and Combinatorial Optimization - 7th International IPCO Conference, 1999, Proceedings. Cornuejols, G., Burkard, R. E. & Woeginger, G. J. (eds.). Springer Verlag, p. 202-217 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1610).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    5 Scopus citations
  • 1988

    Ice nuclei of biological origin

    Levin, Z., Yankofsky, S. A., Wagner, P. E. (Editor) & Vali, G. (Editor), 1988, Atmospheric Aerosols and Nucleation: Proceedings of the Twelfth International Conference on Atmospheric Aerosols and Nucleation, Held at the University of Vienna, Austria, August 22–27, 1988. Wagner, P. E. & Vali, G. (eds.). Springer-Verlag Berlin Heidelberg, p. 619-633 15 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • 1984

    GEL ENTRAPMENT OF WHOLE CELLS AND ENZYMES IN CROSSLINKED, PREPOLYMERIZED POLYACRYLAMIDE HYDRAZIDE.

    Freeman, A., 1984, Enzyme Engineering: Proceedings of the International Enzyme Engineering Conference. Laskin, A. I., Tsao, G. T. & Wingard, L. B. J. (eds.). New York Acad of Sciences (Annals v 434), p. 418-426 9 p. (Enzyme Engineering: Proceedings of the International Enzyme Engineering Conference).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    11 Scopus citations
  • 1983

    COMBINED ELLIPSOMETRIC AND AC IMPEDANCE MEASUREMENTS OF OXIDE FILMS ON RUTHENIUM.

    Rishpon, J., Reshef, I. & Gottesfeld, S., 1983, Thin Films Science and Technology. Elsevier, p. 205-210 6 p. (Thin Films Science and Technology).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

  • The cellulosome: A discrete cell surface organelle of Clostridium thermocellum which exhibits separate antigenic, cellulose-binding and various cellulolytic activities

    Lamed, R., Setter, E., Kenig, R. & Bayer, E. A., 1983, Biotechnology Bioengineering Symposium. 13 ed. John Wiley & Sons Inc., Vol. VOL. 13. p. 163-181 19 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    241 Scopus citations