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  • 2025

    A Review of Miniature Radio Transmitters for Wildlife Tracking

    Toledo, S., Jan 2025, In: Sensors. 25, 2, 517.

    Research output: Contribution to journal › Review article › peer-review

    Open Access

  • Test of Rapamycin in Aging Dogs (TRIAD): study design and rationale for a prospective, parallel-group, double-masked, randomized, placebo-controlled, multicenter trial of rapamycin in healthy middle-aged dogs from the Dog Aging Project

    The Dog Aging Project Consortium, 2025, (Accepted/In press) In: GeroScience. 103208.

    Research output: Contribution to journal › Review article › peer-review

  • 2024

    Current and future directions in network biology

    Zitnik, M., Li, M. M., Wells, A., Glass, K., Gysi, D. M., Krishnan, A., Murali, T. M., Radivojac, P., Roy, S., Baudot, A., Bozdag, S., Chen, D. Z., Cowen, L., Devkota, K., Gitter, A., Gosline, S. J. C., Gu, P., Guzzi, P. H., Huang, H. & Jiang, M. & 17 others, Kesimoglu, Z. N., Koyuturk, M., Ma, J., Pico, A. R., Przulj, N., Przytycka, T. M., Raphael, B. J., Ritz, A., Sharan, R., Shen, Y., Singh, M., Slonim, D. K., Tong, H., Yang, X. H., Yoon, B. J., Yu, H. & Milenkovic, T., 2024, In: Bioinformatics Advances. 4, 1, vbae099.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    7 Scopus citations
  • 2023

    Banking on a new understanding: translational opportunities from veterinary biobanks

    Dog Aging Project Consortium, Jun 2023, In: GeroScience. 45, 3, p. 1439-1450 12 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    2 Scopus citations

  • Breaking the Tie: Benacerraf's Identification Argument Revisited

    Avron, A. & Grabmayr, B., 1 Feb 2023, In: Philosophia Mathematica. 31, 1, p. 81-103 23 p.

    Research output: Contribution to journal › Review article › peer-review

    2 Scopus citations

  • Machine learning for evolutionary-based and physics-inspired protein design: Current and future synergies

    Malbranke, C., Bikard, D., Cocco, S., Monasson, R. & Tubiana, J., Jun 2023, In: Current Opinion in Structural Biology. 80, 102571.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    17 Scopus citations

  • Toward next-generation endoscopes integrating biomimetic video systems, nonlinear optical microscopy, and deep learning

    Stanciu, S. G., König, K., Song, Y. M., Wolf, L., Charitidis, C. A., Bianchini, P. & Goetz, M., 1 Jun 2023, In: Biophysics Reviews. 4, 2, 021307.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    12 Scopus citations
  • 2022

    An open science study of ageing in companion dogs

    The Dog Aging Project Consortium, 3 Feb 2022, In: Nature. 602, 7895, p. 51-57 7 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    71 Scopus citations

  • Big-data approaches lead to an increased understanding of the ecology of animal movement

    Nathan, R., Monk, C. T., Arlinghaus, R., Adam, T., Alós, J., Assaf, M., Baktoft, H., Beardsworth, C. E., Bertram, M. G., Bijleveld, A. I., Brodin, T., Brooks, J. L., Campos-Candela, A., Cooke, S. J., Gjelland, K., Gupte, P. R., Harel, R., Hellström, G., Jeltsch, F. & Killen, S. S. & 17 others, Klefoth, T., Langrock, R., Lennox, R. J., Lourie, E., Madden, J. R., Orchan, Y., Pauwels, I. S., Říha, M., Roeleke, M., Schlägel, U. E., Shohami, D., Signer, J., Toledo, S., Vilk, O., Westrelin, S., Whiteside, M. A. & Jarić, I., 18 Feb 2022, In: Science. 375, 6582, eabg1780.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    277 Scopus citations

  • The Seattle report on database research

    Abadi, D., Ailamaki, A., Andersen, D., Bailis, P., Balazinska, M., Bernstein, P. A., Boncz, P., Chaudhuri, S., Cheung, A., Doan, A., Dong, L., Franklin, M. J., Freire, J., Halevy, A., Hellerstein, J. M., Idreos, S., Kossmann, D., Kraska, T., Krishnamurthy, S. & Markl, V. & 13 others, Melnik, S., Milo, T., Mohan, C., Neumann, T., Ooi, B. C., Ozcan, F., Patel, J., Pavlo, A., Popa, R., Ramakrishnan, R., Re, C., Stonebraker, M. & Suciu, D., Aug 2022, In: Communications of the ACM. 65, 8, p. 72-79 8 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    23 Scopus citations
  • 2021

    Mutational Signatures: From Methods to Mechanisms

    Kim, Y. A., Leiserson, M. D. M., Moorjani, P., Sharan, R., Wojtowicz, D. & Przytycka, T. M., 11 May 2021, In: Annual review of biomedical data science. 4, p. 189-206 18 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    16 Scopus citations
  • 2020

    Shape analysis

    Chang, B. Y. E., Drăgoi, C., Manevich, R., Rinetzky, N. & Rival, X., 5 Oct 2020, In: Foundations and Trends in Programming Languages. 6, 1-2, p. 1-158 158 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    3 Scopus citations
  • 2019

    Microbial community design: methods, applications, and opportunities

    Eng, A. & Borenstein, E., Aug 2019, In: Current Opinion in Biotechnology. 58, p. 117-128 12 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    62 Scopus citations

  • To embed or not: Network embedding as a paradigm in computational biology

    Nelson, W., Zitnik, M., Wang, B., Leskovec, J., Goldenberg, A. & Sharan, R., 2019, In: Frontiers in Genetics. 10, MAY, 381.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    121 Scopus citations
  • 2018

    Multi-omic and multi-view clustering algorithms: Review and cancer benchmark

    Rappoport, N. & Shamir, R., 2018, In: Nucleic Acids Research. 46, 20, p. 10546-10562 17 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    335 Scopus citations
  • 2017

    Network propagation: A universal amplifier of genetic associations

    Cowen, L., Ideker, T., Raphael, B. J. & Sharan, R., 1 Sep 2017, In: Nature Reviews Genetics. 18, 9, p. 551-562 12 p.

    Research output: Contribution to journal › Review article › peer-review

    452 Scopus citations

  • Precision Oncology: The Road Ahead

    Senft, D., Leiserson, M. D. M., Ruppin, E. & Ronai, Z. A., Oct 2017, In: Trends in Molecular Medicine. 23, 10, p. 874-898 25 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    116 Scopus citations
  • 2016

    Telemedicine: a novel service in pediatric emergency care

    Nevet, A., Bitton, Y., Wolf, L. & Waisman, Y., 1 Jul 2016, In: Harefuah. 155, 7, p. 410-413 4 p.

    Research output: Contribution to journal › Review article › peer-review

    7 Scopus citations

  • The beckman report on database research

    Abadi, D., Agrawal, R., Ailamaki, A., Balazinska, M., Bernstein, P. A., Carey, M. J., Chaudhuri, S., Dean, J., Doan, A., Franklin, M. J., Gehrke, J., Haas, L. M., Halevy, A. Y., Hellerstein, J. M., Ioannidis, Y. E., Jagadish, H. V., Kossmann, D., Madden, S., Mehrotra, S. & Milo, T. & 10 others, Naughton, J. F., Ramakrishnan, R., Markl, V., Olston, C., Ooi, B. C., Re, C., Suciu, D., Stonebraker, M., Walter, T. & Widom, J., Feb 2016, In: Communications of the ACM. 59, 2, p. 92-99 8 p.

    Research output: Contribution to journal › Review article › peer-review

    73 Scopus citations
  • 2015

    A global reference for human genetic variation

    Auton, A., Abecasis, G. R., Altshuler, D. M., Durbin, R. M., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H. & Mardis, E. R. & 457 others, Marth, G. T., McVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Boerwinkle, E., Doddapaneni, H., Han, Y., Korchina, V., Kovar, C., Lee, S., Muzny, D., Reid, J. G., Zhu, Y., Chang, Y., Feng, Q., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Lan, T., Li, G., Li, J., Li, Y., Liu, S., Liu, X., Lu, Y., Ma, X., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Xu, X., Yin, Y., Zhang, D., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Gupta, N., Gharani, N., Toji, L. H., Gerry, N. P., Resch, A. M., Barker, J., Clarke, L., Gil, L., Hunt, S. E., Kelman, G., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Roa, A., Smirnov, D., Smith, R. E., Streeter, I., Thormann, A., Toneva, I., Vaughan, B., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Church, D., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'Sullivan, C., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Campbell, C. L., Kong, Y., Marcketta, A., Yu, F., Antunes, L., Bainbridge, M., Sabo, A., Huang, Z., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Shao, H., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Alkan, C., Dal, E., Kahveci, F., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Stromberg, M., Ward, A. N., Wu, J., Zhang, M., Daly, M. J., DePristo, M. A., Handsaker, R. E., Banks, E., Bhatia, G., Del Angel, G., Genovese, G., Li, H., Kashin, S., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Yoon, S. C., Lihm, J., Makarov, V., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Rausch, T., Fritz, M. H., Stütz, A. M., Beal, K., Datta, A., Herrero, J., Ritchie, G. R. S., Zerbino, D., Sabeti, P. C., Shlyakhter, I., Schaffner, S. F., Vitti, J., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Cheetham, R. K., Cox, A., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Kenny, E. E., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Ding, L., Koboldt, D. C., Larson, D., Ye, K., Gravel, S., Swaroop, A., Chew, E., Lappalainen, T., Erlich, Y., Gymrek, M., Willems, T. F., Simpson, J. T., Shriver, M. D., Rosenfeld, J. A., Bustamante, C. D., Montgomery, S. B., De La Vega, F. M., Byrnes, J. K., Carroll, A. W., DeGorter, M. K., Lacroute, P., Maples, B. K., Martin, A. R., Moreno-Estrada, A., Shringarpure, S. S., Zakharia, F., Halperin, E., Baran, Y., Cerveira, E., Hwang, J., Malhotra, A., Plewczynski, D., Radew, K., Romanovitch, M., Zhang, C., Hyland, F. C. L., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Antaki, D., Gujral, M., Noor, A., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Devine, S. E., Kang, H. M., Kidd, J. M., Blackwell, T., Caron, S., Chen, W., Emery, S., Fritsche, L., Fuchsberger, C., Jun, G., Li, B., Lyons, R., Scheller, C., Sidore, C., Song, S., Sliwerska, E., Taliun, D., Tan, A., Welch, R., Wing, M. K., Zhan, X., Awadalla, P., Hodgkinson, A., Li, Y., Shi, X., Quitadamo, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Kretzschmar, W., Iqbal, Z., Mathieson, I., Menelaou, A., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Browning, S. R., Hormozdiari, F., Sudmant, P. H., Khurana, E., Tyler-Smith, C., Albers, C. A., Ayub, Q., Chen, Y., Colonna, V., Jostins, L., Walter, K., Xue, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Fu, Y., Harmanci, A. O., Jin, M., Lee, D., Liu, J., Mu, X. J., Zhang, J., Zhang, Y., Hartl, C., Shakir, K., Degenhardt, J., Meiers, S., Raeder, B., Casale, F. P., Stegle, O., Lameijer, E. W., Hall, I., Bafna, V., Michaelson, J., Gardner, E. J., Mills, R. E., Dayama, G., Chen, K., Fan, X., Chong, Z., Chen, T., Chaisson, M. J., Huddleston, J., Malig, M., Nelson, B. J., Parrish, N. F., Blackburne, B., Lindsay, S. J., Ning, Z., Zhang, Y., Lam, H., Sisu, C., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Yu, J., Li, W., Habegger, L., Yu, H., Cunningham, F., Dunham, I., Lage, K., Jespersen, J. B., Horn, H., Kim, D., Desalle, R., Narechania, A., Sayres, M. A. W., Mendez, F. L., Poznik, G. D., Underhill, P. A., Mittelman, D., Banerjee, R., Cerezo, M., Fitzgerald, T. W., Louzada, S., Massaia, A., Yang, F., Kalra, D., Hale, W., Dan, X., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Via, M., Wang, Y., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Cai, Z., Gao, Y., Chu, J., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Mathias, R. A., Hennis, A., Watson, H., McKenzie, C., Qadri, F., LaRocque, R., Deng, X., Asogun, D., Folarin, O., Happi, C., Omoniwa, O., Stremlau, M., Tariyal, R., Jallow, M., Joof, F. S., Corrah, T., Rockett, K., Kwiatkowski, D., Kooner, J., Hien, T. T., Dunstan, S. J., ThuyHang, N., Fonnie, R., Garry, R., Kanneh, L., Moses, L., Schieffelin, J., Grant, D. S., Gallo, C., Poletti, G., Saleheen, D., Rasheed, A., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Vaydylevich, Y., Duncanson, A., Dunn, M. & Schloss, J. A., 30 Sep 2015, In: Nature. 526, 7571, p. 68-74 7 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    11750 Scopus citations

  • Modeling cancer metabolism on a genome scale

    Yizhak, K., Chaneton, B., Gottlieb, E. & Ruppin, E., 1 Jun 2015, In: Molecular Systems Biology. 11, 6, 817.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    139 Scopus citations
  • 2014

    An EEG Finger-Print of fMRI deep regional activation

    Meir-Hasson, Y., Kinreich, S., Podlipsky, I., Hendler, T. & Intrator, N., 5 Nov 2014, In: NeuroImage. 102, P1, p. 128-141 14 p.

    Research output: Contribution to journal › Review article › peer-review

    64 Scopus citations

  • Parallel profiling of the transcriptome, cistrome, and epigenome in the cellular response to ionizing radiation

    Rashi-Elkeles, S., Warnatz, H. J., Elkon, R., Kupershtein, A., Chobod, Y., Paz, A., Amstislavskiy, V., Sultan, M., Safer, H., Nietfeld, W., Lehrach, H., Shamir, R., Yaspo, M. L. & Shiloh, Y., 13 May 2014, In: Science Signaling. 7, 325, rs3.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    53 Scopus citations
  • 2013

    Metabolically re-modeling the drug pipeline

    Oberhardt, M. A., Yizhak, K. & Ruppin, E., Oct 2013, In: Current Opinion in Pharmacology. 13, 5, p. 778-785 8 p.

    Research output: Contribution to journal › Review article › peer-review

    29 Scopus citations

  • Network-based interpretation of genomic variation data

    Halldórsson, B. V. & Sharan, R., 1 Nov 2013, In: Journal of Molecular Biology. 425, 21, p. 3964-3969 6 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    13 Scopus citations

  • Pathway-based analysis of genomic variation data

    Atias, N., Istrail, S. & Sharan, R., Dec 2013, In: Current Opinion in Genetics and Development. 23, 6, p. 622-626 5 p.

    Research output: Contribution to journal › Review article › peer-review

    8 Scopus citations

  • Phase-change memory: An architectural perspective

    Zilberberg, O., Weiss, S. & Toledo, S., Jun 2013, In: ACM Computing Surveys. 45, 3, 29.

    Research output: Contribution to journal › Review article › peer-review

    50 Scopus citations

  • Protein-protein interaction modeling and inhibition: The TAU Bioinfo3D perspective

    Wolfson, H. J., Apr 2013, In: Israel Journal of Chemistry. 53, 3-4, p. 180-184 5 p.

    Research output: Contribution to journal › Review article › peer-review

  • 2012

    Comparative analysis of protein networks: Hard problems, practical solutions

    Atias, N. & Sharan, R., May 2012, In: Communications of the ACM. 55, 5, p. 88-97 10 p.

    Research output: Contribution to journal › Review article › peer-review

    35 Scopus citations

  • Foreword

    Arieli, O., Konikowska, B., Rabinovich, A. & Zamansky, A., 14 Oct 2012, In: Journal of Logic and Computation. 26, 1, p. 1-6 6 p.

    Research output: Contribution to journal › Review article › peer-review

  • Predicting drug targets and biomarkers of cancer via genome-scale metabolic modeling

    Jerby, L. & Ruppin, E., 15 Oct 2012, In: Clinical Cancer Research. 18, 20, p. 5572-5584 13 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    85 Scopus citations
  • 2011

    ANAT: A tool for constructing and analyzing functional protein networks

    Yosef, N., Zalckvar, E., Rubinstein, A. D., Homilius, M., Atias, N., Vardi, L., Berman, I., Zur, H., Kimchi, A., Ruppin, E. & Sharan, R., 25 Oct 2011, In: Science Signaling. 4, 196, pl1.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    45 Scopus citations

  • A survey on shape correspondence

    Van Kaick, O., Zhang, H., Hamarneh, G. & Cohen-Or, D., 2011, In: Computer Graphics Forum. 30, 6, p. 1681-1707 27 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    505 Scopus citations

  • Semialgebraic range reporting and emptiness searching with applications

    Sharir, M. & Shaul, H., 2011, In: SIAM Journal on Computing. 40, 4, p. 1045-1074 30 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    15 Scopus citations

  • Transcriptional modulation induced by ionizing radiation: P53 remains a central player

    Rashi-Elkeles, S., Elkon, R., Shavit, S., Lerenthal, Y., Linhart, C., Kupershtein, A., Amariglio, N., Rechavi, G., Shamir, R. & Shiloh, Y., Aug 2011, In: Molecular Oncology. 5, 4, p. 336-348 13 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    83 Scopus citations
  • 2010

    Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks

    Ruppin, E., Papin, J. A., de Figueiredo, L. F. & Schuster, S., Aug 2010, In: Current Opinion in Biotechnology. 21, 4, p. 502-510 9 p.

    Research output: Contribution to journal › Review article › peer-review

    79 Scopus citations
  • 2009

    Peter Smith. An introduction to Gödel's theorems. Cambridge Introductions to Philosophy, Cambridge University Press, 2007, xiv + 362 pp.

    Avron, A., 2009, In: Bulletin of Symbolic Logic. 15, 2, p. 218-222 5 p.

    Research output: Contribution to journal › Review article › peer-review

  • 2008

    Modelling and analysis of gene regulatory networks

    Karlebach, G. & Shamir, R., Oct 2008, In: Nature Reviews Molecular Cell Biology. 9, 10, p. 770-780 11 p.

    Research output: Contribution to journal › Review article › peer-review

    923 Scopus citations

  • Network-based prediction of human tissue-specific metabolism

    Shlomi, T., Cabili, M. N., Herrgård, M. J., Palsson, B. & Ruppin, E., Sep 2008, In: Nature Biotechnology. 26, 9, p. 1003-1010 8 p.

    Research output: Contribution to journal › Review article › peer-review

    503 Scopus citations

  • Principles of flexible protein-protein docking

    Andrusier, N., Mashiach, E., Nussinov, R. & Wolfson, H. J., 1 Nov 2008, In: Proteins: Structure, Function and Genetics. 73, 2, p. 271-289 19 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    198 Scopus citations

  • Protein networks in disease

    Ideker, T. & Sharan, R., Apr 2008, In: Genome Research. 18, 4, p. 644-652 9 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    670 Scopus citations
  • 2007

    Network-based prediction of protein function

    Sharan, R., Ulitsky, I. & Shamir, R., 2007, In: Molecular Systems Biology. 3, p. 1-13 13 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    840 Scopus citations

  • Principles of nanostructure design with protein building blocks

    Tsai, C. J., Zheng, J., Zanuy, D., Haspel, N., Wolfson, H., Alemán, C. & Nussinov, R., Jul 2007, In: Proteins: Structure, Function and Genetics. 68, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Review article › peer-review

    51 Scopus citations
  • 2006

    Modeling cellular machinery through biological network comparison

    Sharan, R. & Ideker, T., Apr 2006, In: Nature Biotechnology. 24, 4, p. 427-433 7 p.

    Research output: Contribution to journal › Review article › peer-review

    465 Scopus citations

  • Multi-node graphs: A framework for multiplexed biological assays

    Alon, N., Asodi, V., Cantor, C., Kasif, S. & Rachlin, J., Dec 2006, In: Journal of Computational Biology. 13, 10, p. 1659-1672 14 p.

    Research output: Contribution to journal › Review article › peer-review

    4 Scopus citations

  • Predicting molecular interactions in silico: II. Protein-protein and protein-drug docking

    Schneidman-Duhovny, D., Nussinov, R. & Wolfson, H. J., Jan 2006, In: Frontiers in Medicinal Chemistry. 3, 1, p. 585-613 29 p.

    Research output: Contribution to journal › Review article › peer-review

    7 Scopus citations

  • Predicting molecular interactions in silico: I. An updated guide to pharmacophore identification and its applications to drug design

    Dror, O., Shulman-Peleg, A., Nussinov, R. & Wolfson, H. J., Jan 2006, In: Frontiers in Medicinal Chemistry. 3, 1, p. 551-584 34 p.

    Research output: Contribution to journal › Review article › peer-review

    20 Scopus citations

  • Quadratic forms on graphs

    Alon, N., Makarychev, K., Makarychev, Y. & Naor, A., Mar 2006, In: Inventiones Mathematicae. 163, 3, p. 499-522 24 p.

    Research output: Contribution to journal › Review article › peer-review

    60 Scopus citations

  • Toward a topological characterization of asynchronous complexity

    Hoest, G. & Shavit, N., 2006, In: SIAM Journal on Computing. 36, 2, p. 457-497 41 p.

    Research output: Contribution to journal › Review article › peer-review

    37 Scopus citations
  • 2005

    Algorithms and data structures for flash memories

    Gal, E. & Toledo, S., Jun 2005, In: ACM Computing Surveys. 37, 2, p. 138-163 26 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    491 Scopus citations